Wall clock time and date at job start Sun Mar 29 2020 21:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99840 * 2 1 4 4 H 1.48500 * 109.47065 * 269.99800 * 3 2 1 5 5 H 1.48506 * 109.47265 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47187 * 150.00045 * 3 2 1 7 7 C 1.37882 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99901 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.34786 * 120.00105 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99717 * 179.97438 * 11 10 9 14 14 H 1.09001 * 110.21908 * 39.53054 * 13 11 10 15 15 C 1.54480 * 110.32189 * 277.54296 * 13 11 10 16 16 C 1.54618 * 101.76574 * 215.55028 * 15 13 11 17 17 C 1.51284 * 104.19819 * 24.79772 * 16 15 13 18 18 O 1.21284 * 124.94089 * 163.77039 * 17 16 15 19 19 N 1.34413 * 110.11346 * 343.74895 * 17 16 15 20 20 H 0.96992 * 120.00173 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47529 * 59.99468 * 9 7 2 22 22 H 1.09009 * 109.47135 * 299.99435 * 9 7 2 23 23 H 0.97000 * 120.00118 * 359.97438 * 10 9 7 24 24 H 1.09003 * 110.96745 * 333.67359 * 15 13 11 25 25 H 1.08997 * 110.96787 * 97.39134 * 15 13 11 26 26 H 1.09008 * 110.48943 * 143.47618 * 16 15 13 27 27 H 1.08998 * 110.49021 * 266.11724 * 16 15 13 28 28 H 0.97003 * 124.34694 * 179.85661 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5616 -5.1050 0.0020 13 6 2.7334 -6.0287 0.0005 14 1 3.5783 -5.8022 0.6508 15 6 3.2255 -6.3131 -1.4360 16 6 3.3709 -7.8523 -1.4205 17 6 2.4159 -8.3044 -0.3378 18 8 2.0192 -9.4412 -0.1918 19 7 2.0715 -7.2631 0.4391 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 3.1568 -3.4353 0.0002 24 1 2.4849 -5.9986 -2.1714 25 1 4.1856 -5.8318 -1.6218 26 1 3.0820 -8.2726 -2.3839 27 1 4.3931 -8.1365 -1.1705 28 1 1.4664 -7.3208 1.1951 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005839599.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:03 Heat of formation + Delta-G solvation = -82.822552 kcal Electronic energy + Delta-G solvation = -13673.061328 eV Core-core repulsion = 11109.490758 eV Total energy + Delta-G solvation = -2563.570570 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.56721 -38.56610 -36.05306 -34.34257 -32.46278 -31.32708 -28.84605 -26.74316 -23.23121 -22.04974 -20.53579 -19.95546 -17.88084 -17.12082 -16.34224 -15.53698 -15.22440 -14.73903 -14.54934 -14.02600 -13.61651 -13.21009 -13.07998 -12.72942 -12.23265 -12.04170 -11.62538 -11.24474 -11.05637 -10.95168 -10.39811 -9.92617 -9.63047 -9.49207 -8.87025 -8.83154 -8.04854 -6.24327 -4.32160 2.57092 3.00171 3.19151 3.25044 3.27335 3.31935 3.89147 4.27053 4.28602 4.42598 4.79716 4.91413 5.12065 5.24499 5.35843 5.52617 5.67602 5.85392 6.72193 7.02021 7.17831 7.25173 7.39807 7.55179 7.87165 8.22498 8.45203 8.65326 8.90440 9.34638 10.85756 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.077412 B = 0.005881 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.614710 B = 4760.334445 C = 4979.684994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.704 5.704 11 C 0.489 3.511 12 O -0.544 6.544 13 C 0.110 3.890 14 H 0.102 0.898 15 C -0.121 4.121 16 C -0.154 4.154 17 C 0.522 3.478 18 O -0.541 6.541 19 N -0.705 5.705 20 H 0.267 0.733 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.393 0.607 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.915 -8.694 -1.675 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.353 5.353 11 C 0.271 3.729 12 O -0.423 6.423 13 C 0.000 4.000 14 H 0.120 0.880 15 C -0.159 4.159 16 C -0.194 4.194 17 C 0.308 3.692 18 O -0.418 6.418 19 N -0.360 5.360 20 H 0.077 0.923 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.225 0.775 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.735 -9.279 -1.689 12.856 hybrid contribution 0.560 1.215 0.370 1.388 sum 9.295 -8.064 -1.319 12.376 Atomic orbital electron populations 1.69968 1.06147 1.27456 1.48596 1.24961 0.94921 0.99531 0.94587 0.86398 0.79602 0.82546 0.78266 1.20412 1.20986 1.19710 1.21197 0.93286 0.90324 1.53602 0.91773 1.19162 0.88264 0.81837 0.97913 1.46463 1.11375 1.05841 1.71592 1.20476 0.89433 0.84474 0.78478 1.90711 1.16475 1.84676 1.50389 1.21692 0.95133 0.85196 0.97980 0.88036 1.22595 1.03490 0.95187 0.94615 1.22358 1.00789 0.96355 0.99922 1.20833 0.81086 0.84358 0.82926 1.90744 1.58209 1.19795 1.73063 1.45946 1.48437 1.08251 1.33392 0.92345 0.95377 0.95387 0.77457 0.89212 0.88158 0.87765 0.87544 0.74538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.34 13.29 55.43 0.74 -24.61 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 15 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.27 -5.86 7.11 56.52 0.40 -5.45 15 7 C -0.55 -14.08 9.28 -34.44 -0.32 -14.40 15 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 15 9 C 0.25 6.23 5.43 -5.20 -0.03 6.20 15 10 N -0.70 -13.29 5.55 -61.47 -0.34 -13.63 15 11 C 0.49 8.75 7.02 -10.98 -0.08 8.67 15 12 O -0.54 -12.36 16.58 5.56 0.09 -12.26 15 13 C 0.11 1.35 3.92 -68.16 -0.27 1.09 15 14 H 0.10 0.95 8.14 -51.93 -0.42 0.53 15 15 C -0.12 -1.18 6.68 -25.10 -0.17 -1.35 15 16 C -0.15 -1.48 6.86 -26.75 -0.18 -1.66 15 17 C 0.52 7.34 8.43 -10.86 -0.09 7.25 15 18 O -0.54 -9.67 18.03 5.55 0.10 -9.57 15 19 N -0.71 -9.64 5.47 -53.88 -0.29 -9.93 15 20 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 22 H 0.03 0.78 8.14 -51.92 -0.42 0.36 15 23 H 0.39 6.06 8.32 -40.82 -0.34 5.72 15 24 H 0.09 1.02 7.91 -51.93 -0.41 0.61 15 25 H 0.10 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.10 0.92 8.14 -51.92 -0.42 0.49 15 27 H 0.11 0.76 8.14 -51.93 -0.42 0.34 15 28 H 0.42 5.79 8.96 -40.82 -0.37 5.42 15 LS Contribution 252.79 15.07 3.81 3.81 Total: -1.00 -33.38 252.79 -5.34 -38.71 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.19 Total: 4.96 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.23 Total: 7.43 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.10 Total: -48.17 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.19 Total: -21.83 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.38 -5.34 -38.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005839599.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.110 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds