Wall clock time and date at job start Sun Mar 29 2020 21:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99840 * 2 1 4 4 H 1.48500 * 109.47065 * 269.99800 * 3 2 1 5 5 H 1.48506 * 109.47265 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47187 * 150.00045 * 3 2 1 7 7 C 1.37882 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99901 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.34786 * 120.00105 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99717 * 179.97438 * 11 10 9 14 14 H 1.09001 * 110.21908 * 39.53054 * 13 11 10 15 15 C 1.54480 * 110.32189 * 277.54296 * 13 11 10 16 16 C 1.54618 * 101.76574 * 215.55028 * 15 13 11 17 17 C 1.51284 * 104.19819 * 24.79772 * 16 15 13 18 18 O 1.21284 * 124.94089 * 163.77039 * 17 16 15 19 19 N 1.34413 * 110.11346 * 343.74895 * 17 16 15 20 20 H 0.96992 * 120.00173 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47529 * 59.99468 * 9 7 2 22 22 H 1.09009 * 109.47135 * 299.99435 * 9 7 2 23 23 H 0.97000 * 120.00118 * 359.97438 * 10 9 7 24 24 H 1.09003 * 110.96745 * 333.67359 * 15 13 11 25 25 H 1.08997 * 110.96787 * 97.39134 * 15 13 11 26 26 H 1.09008 * 110.48943 * 143.47618 * 16 15 13 27 27 H 1.08998 * 110.49021 * 266.11724 * 16 15 13 28 28 H 0.97003 * 124.34694 * 179.85661 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5616 -5.1050 0.0020 13 6 2.7334 -6.0287 0.0005 14 1 3.5783 -5.8022 0.6508 15 6 3.2255 -6.3131 -1.4360 16 6 3.3709 -7.8523 -1.4205 17 6 2.4159 -8.3044 -0.3378 18 8 2.0192 -9.4412 -0.1918 19 7 2.0715 -7.2631 0.4391 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 3.1568 -3.4353 0.0002 24 1 2.4849 -5.9986 -2.1714 25 1 4.1856 -5.8318 -1.6218 26 1 3.0820 -8.2726 -2.3839 27 1 4.3931 -8.1365 -1.1705 28 1 1.4664 -7.3208 1.1951 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005839599.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:02 Heat of formation + Delta-G solvation = -110.984007 kcal Electronic energy + Delta-G solvation = -13674.282501 eV Core-core repulsion = 11109.490758 eV Total energy + Delta-G solvation = -2564.791742 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.72438 -40.01545 -37.26282 -36.15753 -34.37406 -32.24850 -30.32450 -28.35346 -24.88769 -23.31276 -21.60617 -21.39604 -19.36771 -18.29689 -17.91647 -17.09211 -16.66962 -16.26760 -16.08426 -15.42529 -14.69743 -14.67158 -14.17157 -14.08717 -13.89802 -13.50999 -12.91676 -12.86247 -12.68807 -12.21555 -12.04783 -11.47756 -11.10967 -10.96273 -10.79592 -10.14095 -9.86568 -8.27984 -6.44385 1.45621 1.47650 1.49305 1.58877 1.59708 2.13403 2.38948 2.63155 3.07747 3.35370 3.50054 3.85868 4.05266 4.15668 4.53259 4.83870 5.00633 5.07841 5.12782 5.24098 5.47139 5.63645 5.70115 5.85192 5.95941 6.66815 6.83946 7.14471 7.24646 7.44428 8.84071 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.077412 B = 0.005881 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.614710 B = 4760.334445 C = 4979.684994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.253 1.253 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.264 3.736 10 N -0.695 5.695 11 C 0.487 3.513 12 O -0.600 6.600 13 C 0.121 3.879 14 H 0.148 0.852 15 C -0.114 4.114 16 C -0.139 4.139 17 C 0.511 3.489 18 O -0.588 6.588 19 N -0.712 5.712 20 H 0.268 0.732 21 H -0.012 1.012 22 H -0.013 1.013 23 H 0.414 0.586 24 H 0.070 0.930 25 H 0.146 0.854 26 H 0.114 0.886 27 H 0.144 0.856 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.426 -8.269 -2.162 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.176 1.176 7 C -0.590 4.590 8 H 0.108 0.892 9 C 0.141 3.859 10 N -0.345 5.345 11 C 0.273 3.727 12 O -0.481 6.481 13 C 0.012 3.988 14 H 0.166 0.834 15 C -0.152 4.152 16 C -0.179 4.179 17 C 0.299 3.701 18 O -0.469 6.469 19 N -0.365 5.365 20 H 0.076 0.924 21 H 0.006 0.994 22 H 0.005 0.995 23 H 0.251 0.749 24 H 0.088 0.912 25 H 0.164 0.836 26 H 0.133 0.867 27 H 0.162 0.838 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.319 -8.860 -2.183 15.330 hybrid contribution -0.599 1.034 0.539 1.311 sum 11.720 -7.826 -1.644 14.188 Atomic orbital electron populations 1.70139 1.08365 1.28517 1.50159 1.26068 0.95705 1.03972 0.93979 0.85171 0.78568 0.77012 0.78560 1.19644 1.21468 1.17607 1.21636 0.94528 0.90312 1.52562 0.89217 1.18570 0.88765 0.84383 0.94160 1.46102 1.11523 1.05012 1.71826 1.21539 0.89739 0.85256 0.76189 1.90691 1.19523 1.85487 1.52424 1.21878 0.93924 0.81862 1.01108 0.83440 1.22733 1.05027 0.95632 0.91777 1.22415 1.01305 0.95700 0.98446 1.21696 0.81255 0.83621 0.83509 1.90715 1.60136 1.21710 1.74322 1.46177 1.48312 1.08898 1.33149 0.92364 0.99403 0.99538 0.74906 0.91165 0.83571 0.86749 0.83798 0.75381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 15 2 C 0.00 0.12 5.46 84.66 0.46 0.58 15 3 Si 0.98 40.49 29.54 68.60 2.03 42.51 15 4 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 5 H -0.29 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 15 7 C -0.55 -28.21 9.28 25.60 0.24 -27.97 15 8 H 0.09 4.02 7.60 -2.91 -0.02 4.00 15 9 C 0.26 13.63 5.43 85.63 0.46 14.09 15 10 N -0.69 -25.64 5.55 -466.79 -2.59 -28.23 15 11 C 0.49 17.19 7.02 87.66 0.62 17.80 15 12 O -0.60 -28.22 16.58 -3.03 -0.05 -28.27 15 13 C 0.12 2.64 3.92 44.70 0.18 2.81 15 14 H 0.15 2.00 8.14 -2.39 -0.02 1.99 15 15 C -0.11 -1.76 6.68 31.65 0.21 -1.55 15 16 C -0.14 -2.12 6.86 30.58 0.21 -1.91 15 17 C 0.51 13.61 8.43 87.90 0.74 14.35 15 18 O -0.59 -20.94 18.03 -3.04 -0.05 -21.00 15 19 N -0.71 -18.65 5.47 -442.97 -2.42 -21.07 15 20 H 0.27 14.78 8.31 -92.71 -0.77 14.00 15 21 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 15 22 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 15 23 H 0.41 11.58 8.32 -92.71 -0.77 10.81 15 24 H 0.07 1.41 7.91 -2.39 -0.02 1.39 15 25 H 0.15 1.02 8.14 -2.39 -0.02 1.00 15 26 H 0.11 1.61 8.14 -2.38 -0.02 1.59 15 27 H 0.14 1.22 8.14 -2.39 -0.02 1.20 15 28 H 0.41 11.48 8.96 -92.71 -0.83 10.65 15 Total: -1.00 -77.47 252.79 -0.10 -77.57 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -0.41 Total: 14.90 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 3.12 Total: 18.21 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -4.73 Total: -103.92 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.11 Total: -49.27 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Total: -77.47 -0.10 -77.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005839599.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.419 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds