Wall clock time and date at job start Sun Mar 29 2020 21:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.53229 * 2 1 4 4 C 1.53113 * 109.50597 * 239.90172 * 2 1 3 5 5 C 1.53112 * 109.16229 * 182.40250 * 4 2 1 6 6 H 1.09001 * 109.50752 * 177.58928 * 5 4 2 7 7 C 1.52995 * 109.50526 * 297.71271 * 5 4 2 8 8 C 1.53046 * 109.27994 * 57.65358 * 5 4 2 9 9 N 1.46846 * 109.51930 * 300.81987 * 8 5 4 10 10 C 1.46896 * 110.99781 * 185.83753 * 9 8 5 11 11 C 1.52998 * 109.47029 * 170.00262 * 10 9 8 12 12 C 1.50706 * 109.47348 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.46854 * 111.19531 * 61.74384 * 9 8 5 21 21 H 1.09004 * 109.46874 * 180.10034 * 1 2 3 22 22 H 1.09002 * 109.47659 * 300.09697 * 1 2 3 23 23 H 1.08999 * 109.47353 * 60.10269 * 1 2 3 24 24 H 1.08998 * 109.52750 * 62.49463 * 4 2 1 25 25 H 1.09005 * 109.57625 * 302.33794 * 4 2 1 26 26 H 1.08997 * 109.47474 * 179.80465 * 7 5 4 27 27 H 1.09003 * 109.47134 * 299.80175 * 7 5 4 28 28 H 1.08995 * 109.47393 * 59.80093 * 7 5 4 29 29 H 1.08993 * 109.46086 * 180.80733 * 8 5 4 30 30 H 1.08998 * 109.45006 * 60.83301 * 8 5 4 31 31 H 1.09000 * 109.47274 * 50.00393 * 10 9 8 32 32 H 1.09002 * 109.47154 * 289.99900 * 10 9 8 33 33 H 1.09001 * 109.47671 * 60.00253 * 11 10 9 34 34 H 1.09006 * 109.47297 * 299.99972 * 11 10 9 35 35 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 36 36 H 1.08993 * 109.46225 * 58.27077 * 20 9 8 37 37 H 1.09004 * 109.45825 * 178.24027 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2487 5 6 3.5711 -0.7718 -1.2107 6 1 3.9396 -1.3234 -2.0756 7 6 4.1278 0.6530 -1.2374 8 6 4.0230 -1.4729 0.0726 9 7 3.5093 -0.7419 1.2380 10 6 4.0373 -1.3056 2.4875 11 6 3.6875 -0.3783 3.6531 12 6 4.2297 -0.9562 4.9350 13 1 4.7694 -1.8916 4.9199 14 6 4.0368 -0.2908 6.1270 15 7 3.3792 0.8480 6.1456 16 14 4.7082 -1.0076 7.7160 17 1 4.3700 -0.1069 8.8472 18 1 4.1054 -2.3444 7.9497 19 1 6.1838 -1.1409 7.6143 20 6 2.0409 -0.7234 1.2481 21 1 -0.3633 -1.0277 0.0018 22 1 -0.3634 0.5153 0.8891 23 1 -0.3634 0.5122 -0.8909 24 1 1.7157 -0.1871 -2.1398 25 1 1.6454 -1.7392 -1.2700 26 1 5.2168 0.6183 -1.2069 27 1 3.8058 1.1518 -2.1516 28 1 3.7575 1.2041 -0.3731 29 1 5.1121 -1.4960 0.1095 30 1 3.6374 -2.4923 0.0843 31 1 5.1203 -1.4030 2.4131 32 1 3.5950 -2.2870 2.6588 33 1 2.6044 -0.2808 3.7277 34 1 4.1297 0.6033 3.4819 35 1 3.0302 1.2200 5.3205 36 1 1.6648 -1.7463 1.2545 37 1 1.6905 -0.2021 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019441217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:38 Heat of formation + Delta-G solvation = -31.363341 kcal Electronic energy + Delta-G solvation = -14659.219310 eV Core-core repulsion = 12434.972279 eV Total energy + Delta-G solvation = -2224.247031 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.26341 -34.90135 -33.09673 -32.74545 -29.06450 -26.56818 -26.47339 -24.71021 -22.73204 -21.20204 -20.29816 -18.49837 -16.71862 -15.53483 -15.00299 -14.40452 -14.08319 -13.81739 -13.67547 -13.37718 -12.96329 -12.58315 -12.17026 -11.92184 -11.69119 -11.52488 -11.33039 -11.11838 -10.82690 -10.77266 -10.39747 -10.14626 -10.12636 -10.05248 -9.86113 -9.48307 -8.52583 -8.27047 -7.70470 -6.32320 -4.00628 3.45811 3.48116 3.66788 4.39237 4.60981 4.85557 4.94890 5.05331 5.24914 5.42295 5.45450 5.60366 5.73659 5.75944 5.81735 5.85918 5.87039 5.93386 6.03806 6.11694 6.18667 6.19701 6.26269 6.34436 6.45561 6.48548 6.56937 6.72072 6.87155 7.35451 7.49497 7.75698 7.79126 8.29022 8.50746 8.93125 9.71592 11.08861 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045137 B = 0.006936 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.180050 B = 4036.221400 C = 4328.323456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.080 0.920 4 C -0.108 4.108 5 C -0.088 4.088 6 H 0.065 0.935 7 C -0.138 4.138 8 C 0.059 3.941 9 N -0.537 5.537 10 C 0.071 3.929 11 C 0.016 3.984 12 C -0.604 4.604 13 H 0.046 0.954 14 C 0.015 3.985 15 N -0.913 5.913 16 Si 1.069 2.931 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.288 1.288 20 C 0.061 3.939 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.007 0.993 34 H 0.015 0.985 35 H 0.269 0.731 36 H 0.023 0.977 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 -2.804 -14.250 14.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.098 0.902 4 C -0.146 4.146 5 C -0.107 4.107 6 H 0.083 0.917 7 C -0.195 4.195 8 C -0.069 4.069 9 N -0.261 5.261 10 C -0.056 4.056 11 C -0.021 4.021 12 C -0.642 4.642 13 H 0.065 0.935 14 C -0.188 4.188 15 N -0.549 5.549 16 Si 0.897 3.103 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.067 4.067 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.226 -2.066 -12.644 13.003 hybrid contribution -0.347 -1.257 -1.619 2.079 sum -2.573 -3.322 -14.263 14.869 Atomic orbital electron populations 1.21791 0.95474 1.01481 1.01573 1.21220 0.94664 1.00640 0.94511 0.90187 1.21655 0.95232 1.00040 0.97674 1.21155 0.95388 0.97390 0.96782 0.91687 1.21741 1.00302 0.95940 1.01561 1.22076 0.99643 0.94389 0.90819 1.61976 1.07431 1.54060 1.02634 1.22154 0.98542 0.96477 0.88437 1.19214 0.96019 0.95068 0.91816 1.22028 1.39323 1.09492 0.93394 0.93526 1.25818 0.95525 0.95230 1.02261 1.70768 1.34298 1.18397 1.31439 0.83553 0.75956 0.75335 0.75454 1.20754 1.21543 1.21463 1.22139 0.88063 0.98305 0.98230 0.93074 0.92450 0.92880 0.92292 0.92670 0.93274 0.93925 0.90867 0.91260 0.95833 0.92054 0.96290 0.97445 0.96665 0.92014 0.95831 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.20 37.16 0.34 -1.42 16 2 C -0.09 -1.29 2.53 -90.54 -0.23 -1.52 16 3 H 0.08 1.19 6.58 -51.93 -0.34 0.84 16 4 C -0.11 -1.35 4.79 -26.61 -0.13 -1.48 16 5 C -0.09 -1.15 3.21 -90.54 -0.29 -1.44 16 6 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 7 C -0.14 -1.81 8.75 37.16 0.33 -1.48 16 8 C 0.06 0.92 4.90 -3.83 -0.02 0.90 16 9 N -0.54 -9.99 3.94 -234.67 -0.92 -10.92 16 10 C 0.07 1.56 4.90 -3.83 -0.02 1.54 16 11 C 0.02 0.43 4.21 -27.88 -0.12 0.31 16 12 C -0.60 -17.66 9.11 -34.44 -0.31 -17.97 16 13 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 14 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 15 N -0.91 -28.52 13.65 55.43 0.76 -27.76 16 16 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.06 1.06 4.58 -3.83 -0.02 1.04 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 1.11 6.01 -51.93 -0.31 0.80 16 29 H 0.07 1.06 8.01 -51.93 -0.42 0.65 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 1.34 7.99 -51.93 -0.41 0.93 16 32 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.01 0.20 6.30 -51.93 -0.33 -0.12 16 34 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 35 H 0.27 8.41 7.22 -40.82 -0.29 8.12 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 1.60 6.21 -51.93 -0.32 1.28 16 LS Contribution 284.06 15.07 4.28 4.28 Total: -1.00 -30.46 284.06 -8.23 -38.69 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.70 Total: -3.81 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -0.56 Total: -21.16 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.17 Total: -38.68 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.46 -8.23 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019441217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.329 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds