Wall clock time and date at job start Sun Mar 29 2020 21:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.53229 * 2 1 4 4 C 1.53113 * 109.50597 * 239.90172 * 2 1 3 5 5 C 1.53112 * 109.16229 * 182.40250 * 4 2 1 6 6 H 1.09001 * 109.50752 * 177.58928 * 5 4 2 7 7 C 1.52995 * 109.50526 * 297.71271 * 5 4 2 8 8 C 1.53046 * 109.27994 * 57.65358 * 5 4 2 9 9 N 1.46846 * 109.51930 * 300.81987 * 8 5 4 10 10 C 1.46896 * 110.99781 * 185.83753 * 9 8 5 11 11 C 1.52998 * 109.47029 * 170.00262 * 10 9 8 12 12 C 1.50706 * 109.47348 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.46854 * 111.19531 * 61.74384 * 9 8 5 21 21 H 1.09004 * 109.46874 * 180.10034 * 1 2 3 22 22 H 1.09002 * 109.47659 * 300.09697 * 1 2 3 23 23 H 1.08999 * 109.47353 * 60.10269 * 1 2 3 24 24 H 1.08998 * 109.52750 * 62.49463 * 4 2 1 25 25 H 1.09005 * 109.57625 * 302.33794 * 4 2 1 26 26 H 1.08997 * 109.47474 * 179.80465 * 7 5 4 27 27 H 1.09003 * 109.47134 * 299.80175 * 7 5 4 28 28 H 1.08995 * 109.47393 * 59.80093 * 7 5 4 29 29 H 1.08993 * 109.46086 * 180.80733 * 8 5 4 30 30 H 1.08998 * 109.45006 * 60.83301 * 8 5 4 31 31 H 1.09000 * 109.47274 * 50.00393 * 10 9 8 32 32 H 1.09002 * 109.47154 * 289.99900 * 10 9 8 33 33 H 1.09001 * 109.47671 * 60.00253 * 11 10 9 34 34 H 1.09006 * 109.47297 * 299.99972 * 11 10 9 35 35 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 36 36 H 1.08993 * 109.46225 * 58.27077 * 20 9 8 37 37 H 1.09004 * 109.45825 * 178.24027 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2487 5 6 3.5711 -0.7718 -1.2107 6 1 3.9396 -1.3234 -2.0756 7 6 4.1278 0.6530 -1.2374 8 6 4.0230 -1.4729 0.0726 9 7 3.5093 -0.7419 1.2380 10 6 4.0373 -1.3056 2.4875 11 6 3.6875 -0.3783 3.6531 12 6 4.2297 -0.9562 4.9350 13 1 4.7694 -1.8916 4.9199 14 6 4.0368 -0.2908 6.1270 15 7 3.3792 0.8480 6.1456 16 14 4.7082 -1.0076 7.7160 17 1 4.3700 -0.1069 8.8472 18 1 4.1054 -2.3444 7.9497 19 1 6.1838 -1.1409 7.6143 20 6 2.0409 -0.7234 1.2481 21 1 -0.3633 -1.0277 0.0018 22 1 -0.3634 0.5153 0.8891 23 1 -0.3634 0.5122 -0.8909 24 1 1.7157 -0.1871 -2.1398 25 1 1.6454 -1.7392 -1.2700 26 1 5.2168 0.6183 -1.2069 27 1 3.8058 1.1518 -2.1516 28 1 3.7575 1.2041 -0.3731 29 1 5.1121 -1.4960 0.1095 30 1 3.6374 -2.4923 0.0843 31 1 5.1203 -1.4030 2.4131 32 1 3.5950 -2.2870 2.6588 33 1 2.6044 -0.2808 3.7277 34 1 4.1297 0.6033 3.4819 35 1 3.0302 1.2200 5.3205 36 1 1.6648 -1.7463 1.2545 37 1 1.6905 -0.2021 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019441217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:38 Heat of formation + Delta-G solvation = -49.504052 kcal Electronic energy + Delta-G solvation = -14660.005950 eV Core-core repulsion = 12434.972279 eV Total energy + Delta-G solvation = -2225.033671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55426 -36.62145 -34.87779 -34.06036 -31.00127 -27.75648 -27.52991 -26.58968 -24.55487 -22.37553 -22.10592 -19.66470 -18.91239 -16.96866 -16.40426 -15.71754 -15.61522 -15.39649 -15.04279 -14.99622 -14.54960 -14.06767 -13.67776 -13.41696 -13.09856 -12.85387 -12.63500 -12.54585 -12.40973 -12.12239 -11.94235 -11.83826 -11.75613 -11.39877 -11.18632 -10.95447 -10.71082 -10.54046 -9.22016 -8.71905 -6.42016 1.51088 1.60231 1.79764 2.54865 2.99178 3.14063 3.74104 3.82381 3.93598 4.09858 4.26441 4.32159 4.41883 4.48576 4.53836 4.64564 4.72965 4.76538 4.84647 4.88231 4.92008 4.92866 5.04850 5.15055 5.17381 5.20967 5.30459 5.35911 5.40793 5.45505 5.63737 5.88622 6.14658 6.20925 6.27048 6.55470 7.40862 8.69140 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045137 B = 0.006936 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.180050 B = 4036.221400 C = 4328.323456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.104 4.104 5 C -0.084 4.084 6 H 0.093 0.907 7 C -0.136 4.136 8 C 0.056 3.944 9 N -0.545 5.545 10 C 0.086 3.914 11 C 0.024 3.976 12 C -0.624 4.624 13 H 0.050 0.950 14 C -0.038 4.038 15 N -0.935 5.935 16 Si 1.120 2.880 17 H -0.282 1.282 18 H -0.268 1.268 19 H -0.268 1.268 20 C 0.062 3.938 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.014 0.986 33 H -0.011 1.011 34 H -0.012 1.012 35 H 0.254 0.746 36 H 0.023 0.977 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 -3.902 -15.715 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.141 4.141 5 C -0.103 4.103 6 H 0.111 0.889 7 C -0.193 4.193 8 C -0.072 4.072 9 N -0.269 5.269 10 C -0.042 4.042 11 C -0.013 4.013 12 C -0.662 4.662 13 H 0.069 0.931 14 C -0.235 4.235 15 N -0.572 5.572 16 Si 0.940 3.060 17 H -0.207 1.207 18 H -0.194 1.194 19 H -0.193 1.193 20 C -0.066 4.066 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.007 0.993 34 H 0.006 0.994 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.020 -3.169 -14.152 14.642 hybrid contribution -0.422 -0.892 -1.206 1.559 sum -2.442 -4.062 -15.358 16.073 Atomic orbital electron populations 1.21767 0.93875 1.02077 1.02205 1.21188 0.95965 0.99753 0.93668 0.91213 1.21648 0.94644 1.00473 0.97333 1.21194 0.95914 0.97195 0.95996 0.88863 1.21702 1.00199 0.95957 1.01425 1.22221 0.99732 0.94626 0.90616 1.61917 1.08216 1.54535 1.02237 1.21810 0.98576 0.94992 0.88823 1.19061 0.94416 0.94594 0.93279 1.22468 1.39279 1.09740 0.94686 0.93146 1.27507 0.94874 0.94767 1.06395 1.70909 1.35932 1.19759 1.30642 0.82916 0.76573 0.75396 0.71090 1.20698 1.19355 1.19267 1.22141 0.87376 0.98250 0.98869 0.92474 0.93603 0.90506 0.89783 0.91977 0.93388 0.91690 0.93601 0.91150 0.95418 0.92011 0.96736 0.99266 0.99411 0.93633 0.95907 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.20 71.98 0.66 -2.56 16 2 C -0.09 -2.35 2.53 -10.74 -0.03 -2.38 16 3 H 0.07 2.04 6.58 -2.39 -0.02 2.03 16 4 C -0.10 -2.25 4.79 30.67 0.15 -2.11 16 5 C -0.08 -1.95 3.21 -10.74 -0.03 -1.99 16 6 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.14 -3.27 8.75 71.98 0.63 -2.64 16 8 C 0.06 1.65 4.90 86.33 0.42 2.08 16 9 N -0.54 -20.51 3.94 -896.36 -3.53 -24.04 16 10 C 0.09 3.86 4.90 86.30 0.42 4.28 16 11 C 0.02 1.32 4.21 29.85 0.13 1.45 16 12 C -0.62 -37.20 9.11 25.60 0.23 -36.96 16 13 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 14 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 15 N -0.94 -59.99 13.65 21.45 0.29 -59.70 16 16 Si 1.12 51.41 29.90 68.60 2.05 53.46 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 C 0.06 2.19 4.58 86.32 0.39 2.58 16 21 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 22 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 1.36 6.01 -2.39 -0.01 1.34 16 29 H 0.07 2.06 8.01 -2.39 -0.02 2.04 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 2.74 7.99 -2.39 -0.02 2.72 16 32 H 0.01 0.66 8.12 -2.39 -0.02 0.64 16 33 H -0.01 -0.64 6.30 -2.39 -0.02 -0.65 16 34 H -0.01 -0.75 8.01 -2.38 -0.02 -0.77 16 35 H 0.25 16.64 7.22 -92.71 -0.67 15.97 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.05 1.96 6.21 -2.38 -0.01 1.94 16 Total: -1.00 -66.90 284.06 3.35 -63.56 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.10 Total: 6.80 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 3.44 Total: -40.07 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -3.24 Total: -83.74 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -66.90 3.35 -63.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019441217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.052 kcal (2) G-P(sol) polarization free energy of solvation -66.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds