Wall clock time and date at job start Sun Mar 29 2020 21:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.53654 * 2 1 4 4 C 1.53124 * 109.50236 * 239.90479 * 2 1 3 5 5 C 1.53126 * 109.15878 * 182.40456 * 4 2 1 6 6 H 1.09002 * 109.50346 * 297.67261 * 5 4 2 7 7 C 1.53006 * 109.50147 * 177.59192 * 5 4 2 8 8 C 1.53037 * 109.27801 * 57.65645 * 5 4 2 9 9 N 1.46854 * 109.51886 * 300.81620 * 8 5 4 10 10 C 1.46897 * 110.99665 * 185.84309 * 9 8 5 11 11 C 1.52999 * 109.47049 * 190.00258 * 10 9 8 12 12 C 1.50703 * 109.47170 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00079 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00003 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00176 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00296 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46824 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47298 * 119.99700 * 16 14 12 19 19 H 1.48491 * 109.47307 * 240.00342 * 16 14 12 20 20 C 1.46844 * 111.19703 * 61.74789 * 9 8 5 21 21 H 1.09006 * 109.47097 * 180.09674 * 1 2 3 22 22 H 1.08995 * 109.46834 * 300.09569 * 1 2 3 23 23 H 1.08998 * 109.47092 * 60.09701 * 1 2 3 24 24 H 1.08998 * 109.52745 * 62.49784 * 4 2 1 25 25 H 1.08999 * 109.52030 * 302.30240 * 4 2 1 26 26 H 1.09001 * 109.46617 * 60.00062 * 7 5 4 27 27 H 1.08993 * 109.46990 * 179.97438 * 7 5 4 28 28 H 1.09000 * 109.47147 * 300.00336 * 7 5 4 29 29 H 1.08994 * 109.46593 * 60.83220 * 8 5 4 30 30 H 1.09004 * 109.45972 * 180.81661 * 8 5 4 31 31 H 1.09005 * 109.47485 * 310.00205 * 10 9 8 32 32 H 1.08999 * 109.47565 * 70.00016 * 10 9 8 33 33 H 1.09002 * 109.47229 * 299.99387 * 11 10 9 34 34 H 1.09001 * 109.47124 * 60.00041 * 11 10 9 35 35 H 0.96996 * 120.00208 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.46133 * 58.27161 * 20 9 8 37 37 H 1.09002 * 109.46165 * 178.24800 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5712 -0.7719 -1.2108 6 1 3.9678 0.2432 -1.2305 7 6 4.0882 -1.5461 -2.4251 8 6 4.0230 -1.4730 0.0723 9 7 3.5093 -0.7421 1.2378 10 6 4.0373 -1.3059 2.4873 11 6 3.2970 -0.6914 3.6769 12 6 3.8391 -1.2693 4.9589 13 1 4.6320 -2.0019 4.9281 14 6 3.3228 -0.8627 6.1709 15 7 2.3569 0.0290 6.2084 16 14 3.9942 -1.5796 7.7599 17 1 5.0686 -2.5560 7.4473 18 1 4.5477 -0.4877 8.6005 19 1 2.9008 -2.2644 8.4949 20 6 2.0410 -0.7235 1.2480 21 1 -0.3633 -1.0277 0.0017 22 1 -0.3633 0.5153 0.8891 23 1 -0.3633 0.5123 -0.8908 24 1 1.7156 -0.1870 -2.1399 25 1 1.6453 -1.7391 -1.2690 26 1 3.7632 -1.0482 -3.3386 27 1 5.1773 -1.5796 -2.3977 28 1 3.6924 -2.5614 -2.4041 29 1 3.6375 -2.4925 0.0841 30 1 5.1121 -1.4961 0.1094 31 1 3.8927 -2.3863 2.4881 32 1 5.1010 -1.0817 2.5662 33 1 3.4416 0.3890 3.6762 34 1 2.2332 -0.9157 3.5981 35 1 1.9939 0.3153 7.0611 36 1 1.6648 -1.7465 1.2543 37 1 1.6906 -0.2022 2.1388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019441219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:40 Heat of formation + Delta-G solvation = -28.377780 kcal Electronic energy + Delta-G solvation = -14506.235281 eV Core-core repulsion = 12282.117713 eV Total energy + Delta-G solvation = -2224.117568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.02851 -34.80554 -33.25052 -32.65648 -29.34915 -26.54266 -26.25653 -25.06011 -22.63268 -20.72618 -19.70125 -19.28598 -16.47370 -15.11424 -14.91028 -14.49201 -14.43706 -14.19165 -13.63872 -12.73960 -12.57485 -12.50513 -12.24762 -12.13627 -11.86026 -11.50622 -11.34472 -11.01188 -10.89965 -10.59684 -10.49137 -10.38067 -10.06610 -9.93672 -9.80361 -9.23317 -9.02629 -8.32834 -7.60718 -5.99062 -4.01110 3.31909 3.39235 3.43465 4.40727 4.56447 4.88304 5.05913 5.09003 5.26794 5.37113 5.57415 5.65625 5.69719 5.73833 5.83118 5.92246 5.95025 6.00838 6.05003 6.13208 6.19638 6.27403 6.37612 6.42324 6.46589 6.53977 6.70515 6.74429 6.97368 7.58052 7.68386 7.86077 7.89051 8.08061 8.45282 9.05853 9.62567 11.12428 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045299 B = 0.006816 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.965032 B = 4106.980468 C = 4610.009870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.107 4.107 5 C -0.090 4.090 6 H 0.076 0.924 7 C -0.144 4.144 8 C 0.061 3.939 9 N -0.541 5.541 10 C 0.063 3.937 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.057 3.943 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.067 0.933 31 H 0.018 0.982 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.020 0.980 35 H 0.260 0.740 36 H 0.024 0.976 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -1.620 -14.496 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.094 0.906 4 C -0.145 4.145 5 C -0.109 4.109 6 H 0.094 0.906 7 C -0.202 4.202 8 C -0.068 4.068 9 N -0.265 5.265 10 C -0.064 4.064 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.071 4.071 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.666 -1.052 -14.397 14.451 hybrid contribution 0.062 -1.243 1.038 1.621 sum -0.604 -2.295 -13.359 13.568 Atomic orbital electron populations 1.21776 0.95424 1.01507 1.01532 1.21198 0.94781 1.00368 0.94671 0.90612 1.21689 0.95068 1.00169 0.97583 1.21173 0.95597 1.00191 0.93970 0.90561 1.21790 1.00843 1.00061 0.97514 1.22087 0.99497 0.94623 0.90556 1.62005 1.07796 1.54004 1.02691 1.22298 0.99518 0.95814 0.88749 1.19252 0.95334 0.96795 0.90309 1.21236 1.19608 1.23918 0.91140 0.92728 1.24993 0.95065 0.95117 0.99158 1.69976 1.26495 1.31293 1.25583 0.86539 0.78879 0.79002 0.83600 1.19772 1.20968 1.21044 1.22236 0.87942 0.98495 0.98439 0.93059 0.92304 0.93035 0.92445 0.92618 0.92846 0.92760 0.93019 0.95740 0.91465 0.96406 0.92034 0.95695 0.96137 0.93058 0.95806 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.20 37.16 0.34 -1.52 16 2 C -0.09 -1.35 2.88 -90.54 -0.26 -1.61 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.11 -1.38 4.57 -26.60 -0.12 -1.51 16 5 C -0.09 -1.19 2.88 -90.53 -0.26 -1.45 16 6 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.14 -1.54 9.20 37.16 0.34 -1.19 16 8 C 0.06 0.96 4.71 -3.83 -0.02 0.94 16 9 N -0.54 -10.35 4.81 -234.67 -1.13 -11.47 16 10 C 0.06 1.39 5.21 -3.83 -0.02 1.37 16 11 C 0.02 0.54 4.22 -27.88 -0.12 0.42 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C 0.06 1.04 4.13 -3.84 -0.02 1.02 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 31 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.56 6.21 -51.93 -0.32 0.24 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 1.93 5.81 -51.93 -0.30 1.63 16 LS Contribution 288.79 15.07 4.35 4.35 Total: -1.00 -29.64 288.79 -8.53 -38.17 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.93 Total: -4.33 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.54 Total: -17.23 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.39 Total: -37.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.64 -8.53 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019441219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.795 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds