Wall clock time and date at job start Sun Mar 29 2020 21:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.53654 * 2 1 4 4 C 1.53124 * 109.50236 * 239.90479 * 2 1 3 5 5 C 1.53126 * 109.15878 * 182.40456 * 4 2 1 6 6 H 1.09002 * 109.50346 * 297.67261 * 5 4 2 7 7 C 1.53006 * 109.50147 * 177.59192 * 5 4 2 8 8 C 1.53037 * 109.27801 * 57.65645 * 5 4 2 9 9 N 1.46854 * 109.51886 * 300.81620 * 8 5 4 10 10 C 1.46897 * 110.99665 * 185.84309 * 9 8 5 11 11 C 1.52999 * 109.47049 * 190.00258 * 10 9 8 12 12 C 1.50703 * 109.47170 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00079 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00003 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00176 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00296 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46824 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47298 * 119.99700 * 16 14 12 19 19 H 1.48491 * 109.47307 * 240.00342 * 16 14 12 20 20 C 1.46844 * 111.19703 * 61.74789 * 9 8 5 21 21 H 1.09006 * 109.47097 * 180.09674 * 1 2 3 22 22 H 1.08995 * 109.46834 * 300.09569 * 1 2 3 23 23 H 1.08998 * 109.47092 * 60.09701 * 1 2 3 24 24 H 1.08998 * 109.52745 * 62.49784 * 4 2 1 25 25 H 1.08999 * 109.52030 * 302.30240 * 4 2 1 26 26 H 1.09001 * 109.46617 * 60.00062 * 7 5 4 27 27 H 1.08993 * 109.46990 * 179.97438 * 7 5 4 28 28 H 1.09000 * 109.47147 * 300.00336 * 7 5 4 29 29 H 1.08994 * 109.46593 * 60.83220 * 8 5 4 30 30 H 1.09004 * 109.45972 * 180.81661 * 8 5 4 31 31 H 1.09005 * 109.47485 * 310.00205 * 10 9 8 32 32 H 1.08999 * 109.47565 * 70.00016 * 10 9 8 33 33 H 1.09002 * 109.47229 * 299.99387 * 11 10 9 34 34 H 1.09001 * 109.47124 * 60.00041 * 11 10 9 35 35 H 0.96996 * 120.00208 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.46133 * 58.27161 * 20 9 8 37 37 H 1.09002 * 109.46165 * 178.24800 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5712 -0.7719 -1.2108 6 1 3.9678 0.2432 -1.2305 7 6 4.0882 -1.5461 -2.4251 8 6 4.0230 -1.4730 0.0723 9 7 3.5093 -0.7421 1.2378 10 6 4.0373 -1.3059 2.4873 11 6 3.2970 -0.6914 3.6769 12 6 3.8391 -1.2693 4.9589 13 1 4.6320 -2.0019 4.9281 14 6 3.3228 -0.8627 6.1709 15 7 2.3569 0.0290 6.2084 16 14 3.9942 -1.5796 7.7599 17 1 5.0686 -2.5560 7.4473 18 1 4.5477 -0.4877 8.6005 19 1 2.9008 -2.2644 8.4949 20 6 2.0410 -0.7235 1.2480 21 1 -0.3633 -1.0277 0.0017 22 1 -0.3633 0.5153 0.8891 23 1 -0.3633 0.5123 -0.8908 24 1 1.7156 -0.1870 -2.1399 25 1 1.6453 -1.7391 -1.2690 26 1 3.7632 -1.0482 -3.3386 27 1 5.1773 -1.5796 -2.3977 28 1 3.6924 -2.5614 -2.4041 29 1 3.6375 -2.4925 0.0841 30 1 5.1121 -1.4961 0.1094 31 1 3.8927 -2.3863 2.4881 32 1 5.1010 -1.0817 2.5662 33 1 3.4416 0.3890 3.6762 34 1 2.2332 -0.9157 3.5981 35 1 1.9939 0.3153 7.0611 36 1 1.6648 -1.7465 1.2543 37 1 1.6906 -0.2022 2.1388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019441219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:40 Heat of formation + Delta-G solvation = -46.283637 kcal Electronic energy + Delta-G solvation = -14507.011737 eV Core-core repulsion = 12282.117713 eV Total energy + Delta-G solvation = -2224.894024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37132 -36.42941 -34.69555 -34.35707 -31.27203 -27.64048 -27.48670 -26.89413 -24.37466 -22.06671 -21.21514 -20.58813 -18.63183 -16.61850 -16.54057 -16.18989 -15.87089 -15.40806 -15.05601 -14.35265 -14.29525 -13.74444 -13.60481 -13.31540 -13.13647 -12.90755 -12.80674 -12.65775 -12.57347 -12.27695 -11.99170 -11.68635 -11.54898 -11.43296 -11.27785 -11.03314 -10.89359 -10.55631 -9.17955 -8.22285 -6.33950 1.38836 1.39498 1.52910 2.38856 3.06118 3.10971 3.78514 3.91606 3.96391 4.09963 4.40551 4.46472 4.48772 4.54361 4.64786 4.72083 4.73330 4.82950 4.84778 4.89326 5.00181 5.01918 5.07241 5.13342 5.24548 5.32065 5.38643 5.42346 5.45567 5.57792 5.64806 5.76850 6.08436 6.32444 6.35584 6.82493 7.35271 8.90058 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045299 B = 0.006816 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.965032 B = 4106.980468 C = 4610.009870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.102 4.102 5 C -0.087 4.087 6 H 0.071 0.929 7 C -0.138 4.138 8 C 0.058 3.942 9 N -0.550 5.550 10 C 0.077 3.923 11 C 0.031 3.969 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.277 1.277 20 C 0.060 3.940 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.016 0.984 32 H 0.062 0.938 33 H -0.008 1.008 34 H 0.000 1.000 35 H 0.264 0.736 36 H 0.017 0.983 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -2.412 -15.789 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.140 4.140 5 C -0.106 4.106 6 H 0.089 0.911 7 C -0.195 4.195 8 C -0.069 4.069 9 N -0.274 5.274 10 C -0.050 4.050 11 C -0.006 4.006 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.068 4.068 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.010 0.990 34 H 0.018 0.982 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.193 -1.848 -15.714 15.823 hybrid contribution -0.104 -0.965 1.430 1.728 sum -0.297 -2.814 -14.284 14.561 Atomic orbital electron populations 1.21753 0.93915 1.01982 1.02200 1.21174 0.96042 0.99568 0.93823 0.91402 1.21675 0.94716 1.00378 0.97201 1.21168 0.95915 0.99990 0.93497 0.91058 1.21734 1.01175 0.99935 0.96680 1.22237 0.99778 0.94596 0.90335 1.61996 1.08295 1.54529 1.02575 1.21980 0.98926 0.95270 0.88853 1.19055 0.94668 0.94854 0.92050 1.21649 1.20025 1.24364 0.92395 0.92300 1.25971 0.95167 0.95316 1.03159 1.70111 1.27700 1.32487 1.26845 0.85357 0.78474 0.78427 0.78524 1.18631 1.20196 1.20224 1.22178 0.87551 0.98074 0.99032 0.92671 0.93622 0.90399 0.89817 0.92264 0.91020 0.92225 0.92663 0.95761 0.90955 0.96551 0.91913 0.98952 0.98186 0.92684 0.96460 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.20 71.98 0.66 -2.81 16 2 C -0.09 -2.51 2.88 -10.74 -0.03 -2.54 16 3 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.10 -2.37 4.57 30.68 0.14 -2.23 16 5 C -0.09 -2.09 2.88 -10.74 -0.03 -2.12 16 6 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 7 C -0.14 -2.47 9.20 71.98 0.66 -1.81 16 8 C 0.06 1.78 4.71 86.32 0.41 2.19 16 9 N -0.55 -21.37 4.81 -896.36 -4.31 -25.68 16 10 C 0.08 3.50 5.21 86.30 0.45 3.95 16 11 C 0.03 1.72 4.22 29.85 0.13 1.84 16 12 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 16 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.06 2.25 4.13 86.33 0.36 2.61 16 21 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 22 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 2.12 8.12 -2.38 -0.02 2.10 16 31 H 0.02 0.73 8.08 -2.38 -0.02 0.72 16 32 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.00 0.00 6.21 -2.39 -0.01 -0.02 16 35 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 2.45 5.81 -2.39 -0.01 2.43 16 Total: -1.00 -64.86 288.79 2.43 -62.43 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.99 Total: 5.92 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.44 Total: -32.25 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -4.02 Total: -83.15 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.86 2.43 -62.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019441219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.148 kcal (2) G-P(sol) polarization free energy of solvation -64.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds