Wall clock time and date at job start Sun Mar 29 2020 21:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.50726 * 2 1 4 4 C 1.53126 * 109.50230 * 120.07672 * 2 1 3 5 5 C 1.53124 * 109.15878 * 177.63159 * 4 2 1 6 6 H 1.08993 * 109.49981 * 182.40384 * 5 4 2 7 7 C 1.52998 * 109.49854 * 62.28635 * 5 4 2 8 8 C 1.53035 * 109.27794 * 302.34791 * 5 4 2 9 9 N 1.46844 * 109.52494 * 59.18054 * 8 5 4 10 10 C 1.46897 * 111.00090 * 174.16001 * 9 8 5 11 11 C 1.53004 * 109.47166 * 294.20807 * 10 9 8 12 12 C 1.50698 * 109.47023 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00424 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99736 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99688 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00116 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47380 * 89.99494 * 16 14 12 18 18 H 1.48492 * 109.47349 * 210.00032 * 16 14 12 19 19 H 1.48503 * 109.47271 * 330.00185 * 16 14 12 20 20 C 1.46854 * 111.19703 * 298.25280 * 9 8 5 21 21 H 1.09007 * 109.46993 * 299.92300 * 1 2 3 22 22 H 1.08993 * 109.47074 * 59.91823 * 1 2 3 23 23 H 1.09001 * 109.46908 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.52297 * 297.54107 * 4 2 1 25 25 H 1.08999 * 109.51925 * 57.73310 * 4 2 1 26 26 H 1.09004 * 109.47291 * 60.00223 * 7 5 4 27 27 H 1.09007 * 109.47061 * 179.97438 * 7 5 4 28 28 H 1.08995 * 109.47411 * 299.99848 * 7 5 4 29 29 H 1.09002 * 109.46466 * 299.16376 * 8 5 4 30 30 H 1.09002 * 109.46192 * 179.19659 * 8 5 4 31 31 H 1.09004 * 109.47402 * 54.20756 * 10 9 8 32 32 H 1.09003 * 109.47565 * 174.20990 * 10 9 8 33 33 H 1.08995 * 109.46996 * 299.99996 * 11 10 9 34 34 H 1.09003 * 109.46642 * 60.00221 * 11 10 9 35 35 H 0.97008 * 119.99824 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.46310 * 301.73015 * 20 9 8 37 37 H 1.09004 * 109.45830 * 181.75702 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 1.2491 5 6 3.5713 -0.7707 1.2115 6 1 3.9396 -1.3219 2.0767 7 6 4.1271 0.6545 1.2382 8 6 4.0237 -1.4717 -0.0714 9 7 3.5101 -0.7412 -1.2371 10 6 4.0387 -1.3049 -2.4864 11 6 5.5510 -1.0810 -2.5472 12 6 6.0932 -1.6586 -3.8291 13 1 5.4260 -2.1379 -4.5302 14 6 7.4414 -1.5762 -4.1064 15 7 7.9146 -2.0808 -5.2249 16 14 8.5955 -0.7479 -2.8936 17 1 9.1083 -1.7556 -1.9309 18 1 9.7342 -0.1415 -3.6289 19 1 7.8615 0.3120 -2.1565 20 6 2.0417 -0.7234 -1.2478 21 1 -0.3633 0.5127 0.8907 22 1 -0.3633 0.5151 -0.8892 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7151 -0.1867 2.1399 25 1 1.6458 -1.7389 1.2692 26 1 3.8016 1.1545 2.1505 27 1 5.2163 0.6203 1.2119 28 1 3.7595 1.2041 0.3717 29 1 3.6388 -2.4914 -0.0833 30 1 5.1129 -1.4944 -0.1081 31 1 3.8280 -2.3738 -2.5206 32 1 3.5643 -0.8137 -3.3361 33 1 5.7617 -0.0121 -2.5130 34 1 6.0254 -1.5722 -1.6976 35 1 8.8631 -2.0231 -5.4199 36 1 1.6661 -1.7466 -1.2541 37 1 1.6913 -0.2025 -2.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019441223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:41 Heat of formation + Delta-G solvation = -42.399917 kcal Electronic energy + Delta-G solvation = -14679.481448 eV Core-core repulsion = 12454.755835 eV Total energy + Delta-G solvation = -2224.725613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48907 -36.41237 -34.67252 -33.98399 -31.75888 -27.71812 -27.44709 -26.96816 -23.99987 -22.77599 -21.34390 -19.60539 -19.04637 -16.75394 -16.43918 -16.03922 -15.81384 -15.33970 -14.88670 -14.75910 -14.56068 -14.17518 -13.67749 -13.41098 -12.92851 -12.85869 -12.83013 -12.50413 -12.36258 -11.95484 -11.85969 -11.81179 -11.68408 -11.44318 -11.31682 -10.98891 -10.91970 -10.74920 -9.16023 -8.31712 -6.35850 1.34007 1.36620 1.50057 2.35089 3.03159 3.04018 3.80052 3.88967 4.00162 4.16087 4.33692 4.40582 4.48996 4.54026 4.64141 4.72092 4.81700 4.83518 4.89436 4.94996 4.98375 4.99453 5.09589 5.20524 5.22877 5.26927 5.36755 5.44110 5.47228 5.49263 5.62796 5.68968 6.15788 6.28653 6.34662 6.71723 7.28916 8.85115 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045106 B = 0.007699 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.617649 B = 3636.098257 C = 4044.523717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.104 4.104 5 C -0.087 4.087 6 H 0.083 0.917 7 C -0.135 4.135 8 C 0.054 3.946 9 N -0.542 5.542 10 C 0.083 3.917 11 C 0.003 3.997 12 C -0.535 4.535 13 H 0.031 0.969 14 C 0.008 3.992 15 N -0.950 5.950 16 Si 0.951 3.049 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.249 1.249 20 C 0.058 3.942 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.013 0.987 32 H 0.060 0.940 33 H 0.020 0.980 34 H 0.016 0.984 35 H 0.267 0.733 36 H 0.024 0.976 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 5.042 15.915 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.142 4.142 5 C -0.105 4.105 6 H 0.101 0.899 7 C -0.193 4.193 8 C -0.074 4.074 9 N -0.266 5.266 10 C -0.045 4.045 11 C -0.034 4.034 12 C -0.573 4.573 13 H 0.049 0.951 14 C -0.189 4.189 15 N -0.591 5.591 16 Si 0.774 3.226 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.172 1.172 20 C -0.070 4.070 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.160 5.498 15.845 20.716 hybrid contribution 0.628 -0.970 -0.498 1.258 sum -11.532 4.528 15.347 19.724 Atomic orbital electron populations 1.21752 0.93571 1.01993 1.02447 1.21191 0.96022 0.99931 0.93418 0.90589 1.21651 0.93994 1.00501 0.98028 1.21196 0.96442 0.97217 0.95687 0.89893 1.21708 0.99854 0.95876 1.01820 1.22206 0.99714 0.94504 0.91011 1.61933 1.08363 1.54308 1.02030 1.21797 0.96033 0.95622 0.91048 1.19411 0.93031 0.96431 0.94573 1.21429 0.93654 1.37341 1.04878 0.95055 1.25966 1.00138 0.95652 0.97185 1.70063 1.14730 1.47784 1.26490 0.85648 0.78073 0.79846 0.79061 1.19099 1.20681 1.17238 1.22218 0.86641 0.98666 0.99440 0.91123 0.92502 0.92759 0.90007 0.92293 0.91627 0.94228 0.92522 0.95811 0.92123 0.96870 0.92173 0.96119 0.96578 0.92395 0.95725 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.20 71.98 0.66 -1.70 16 2 C -0.09 -1.89 2.53 -10.74 -0.03 -1.92 16 3 H 0.08 1.75 6.58 -2.39 -0.02 1.74 16 4 C -0.10 -2.10 4.79 30.68 0.15 -1.95 16 5 C -0.09 -2.08 3.21 -10.74 -0.03 -2.11 16 6 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 7 C -0.14 -3.27 8.75 71.98 0.63 -2.64 16 8 C 0.05 1.70 4.73 86.33 0.41 2.10 16 9 N -0.54 -18.71 3.94 -896.34 -3.53 -22.24 16 10 C 0.08 3.50 4.90 86.31 0.42 3.92 16 11 C 0.00 0.16 3.97 29.85 0.12 0.28 16 12 C -0.53 -31.95 9.66 25.60 0.25 -31.71 16 13 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 14 C 0.01 0.45 5.47 84.66 0.46 0.92 16 15 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 16 Si 0.95 45.63 27.47 68.60 1.88 47.52 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 20 C 0.06 1.64 4.75 86.32 0.41 2.05 16 21 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.26 8.14 -2.38 -0.02 1.25 16 27 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.06 1.54 6.01 -2.39 -0.01 1.53 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 2.14 6.21 -2.39 -0.01 2.13 16 31 H 0.01 0.57 8.12 -2.39 -0.02 0.55 16 32 H 0.06 2.57 7.99 -2.39 -0.02 2.55 16 33 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 34 H 0.02 0.78 5.86 -2.39 -0.01 0.76 16 35 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 1.93 8.02 -2.39 -0.02 1.91 16 Total: -1.00 -65.66 281.78 3.04 -62.61 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 0.94 Total: 5.35 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 3.45 Total: -32.76 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -3.23 Total: -82.72 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.52 kcal Total: -65.66 3.04 -62.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019441223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.212 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds