Wall clock time and date at job start Sun Mar 29 2020 21:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.45933 * 2 1 4 4 C 1.53040 * 109.45439 * 240.03115 * 2 1 3 5 5 C 1.53119 * 109.27907 * 180.81039 * 4 2 1 6 6 C 1.53120 * 109.15896 * 57.65079 * 5 4 2 7 7 C 1.53041 * 109.28109 * 302.34749 * 6 5 4 8 8 H 1.09002 * 109.45751 * 299.16662 * 7 6 5 9 9 C 1.52995 * 109.46227 * 179.19990 * 7 6 5 10 10 N 1.46839 * 109.46058 * 119.97921 * 2 1 3 11 11 C 1.46898 * 111.00416 * 305.84344 * 10 2 1 12 12 C 1.52994 * 109.47339 * 295.51070 * 11 10 2 13 13 C 1.50705 * 109.47255 * 175.93172 * 12 11 10 14 14 H 1.08001 * 119.99741 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99919 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00473 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99996 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47398 * 59.99604 * 17 15 13 19 19 H 1.48498 * 109.47535 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47046 * 299.99888 * 17 15 13 21 21 H 1.09001 * 109.47258 * 307.07702 * 1 2 3 22 22 H 1.09002 * 109.47174 * 67.07704 * 1 2 3 23 23 H 1.08997 * 109.47250 * 187.07484 * 1 2 3 24 24 H 1.09002 * 109.50081 * 300.74730 * 4 2 1 25 25 H 1.09000 * 109.50532 * 60.86813 * 4 2 1 26 26 H 1.08994 * 109.52165 * 177.55397 * 5 4 2 27 27 H 1.09005 * 109.52262 * 297.75184 * 5 4 2 28 28 H 1.09000 * 109.50432 * 62.29037 * 6 5 4 29 29 H 1.09004 * 109.49885 * 182.40808 * 6 5 4 30 30 H 1.09002 * 109.46717 * 293.31994 * 9 7 6 31 31 H 1.08991 * 109.47607 * 53.32022 * 9 7 6 32 32 H 1.08996 * 109.47111 * 173.32699 * 9 7 6 33 33 H 1.09007 * 109.46745 * 55.51171 * 11 10 2 34 34 H 1.09004 * 109.47353 * 175.50593 * 11 10 2 35 35 H 1.08998 * 109.47283 * 295.93110 * 12 11 10 36 36 H 1.09004 * 109.46984 * 55.92941 * 12 11 10 37 37 H 0.96998 * 120.00696 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7208 -1.2501 5 6 3.5708 -0.7362 -1.2359 6 6 4.0546 -1.4191 0.0464 7 6 3.4864 -0.6780 1.2589 8 1 3.8404 0.3529 1.2530 9 6 3.9511 -1.3690 2.5424 10 7 2.0192 -0.6918 1.1993 11 6 1.4375 -0.1106 2.4165 12 6 1.9143 1.3350 2.5697 13 6 1.2399 1.9628 3.7623 14 1 0.5408 1.3881 4.3517 15 6 1.5147 3.2709 4.1002 16 7 2.3657 3.9708 3.3821 17 14 0.6782 4.0492 5.5780 18 1 1.0223 3.2825 6.8023 19 1 1.1411 5.4523 5.7268 20 1 -0.7934 4.0313 5.3801 21 1 -0.3634 0.6196 0.8199 22 1 -0.3634 0.4003 -0.9465 23 1 -0.3633 -1.0198 0.1266 24 1 1.6656 -1.7446 -1.2578 25 1 1.6893 -0.1980 -2.1400 26 1 3.9375 -1.2865 -2.1023 27 1 3.9457 0.2868 -1.2674 28 1 3.7122 -2.4539 0.0591 29 1 5.1437 -1.3951 0.0827 30 1 3.5005 -2.3595 2.6053 31 1 5.0369 -1.4638 2.5314 32 1 3.6468 -0.7761 3.4049 33 1 0.3500 -0.1288 2.3439 34 1 1.7534 -0.6913 3.2833 35 1 2.9945 1.3479 2.7147 36 1 1.6616 1.8981 1.6712 37 1 2.5593 4.8910 3.6201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019470777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:45 Heat of formation + Delta-G solvation = -22.712609 kcal Electronic energy + Delta-G solvation = -15020.933234 eV Core-core repulsion = 12797.061327 eV Total energy + Delta-G solvation = -2223.871907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.20488 -34.18045 -33.10011 -32.45070 -29.14974 -27.63332 -25.91499 -24.65030 -22.25476 -20.57266 -20.52095 -18.31868 -16.42390 -15.35569 -14.96116 -14.49817 -14.33782 -13.85103 -13.53295 -12.49203 -12.31849 -12.18375 -12.07291 -11.74852 -11.39841 -11.29834 -11.18018 -11.04043 -10.88615 -10.72774 -10.46886 -10.41921 -10.03355 -9.81676 -9.62487 -9.47128 -9.07059 -8.32971 -7.35602 -5.99716 -4.02474 3.32711 3.37137 3.39655 4.44244 4.57898 5.14577 5.19067 5.24957 5.35420 5.49765 5.72376 5.82431 5.92119 5.93509 5.97647 6.15290 6.16971 6.20235 6.24637 6.26780 6.39808 6.45551 6.52147 6.64306 6.64662 6.70700 6.72768 6.89907 7.03699 7.65229 7.67288 7.79252 7.98341 8.04328 8.45743 9.04932 9.61490 11.11183 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039202 B = 0.008504 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.084281 B = 3291.639409 C = 3524.470798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.079 3.921 3 H 0.047 0.953 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.109 4.109 7 C 0.079 3.921 8 H 0.047 0.953 9 C -0.144 4.144 10 N -0.532 5.532 11 C 0.051 3.949 12 C -0.007 4.007 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 -9.165 -7.180 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 H 0.065 0.935 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.147 4.147 7 C -0.029 4.029 8 H 0.065 0.935 9 C -0.202 4.202 10 N -0.257 5.257 11 C -0.076 4.076 12 C -0.045 4.045 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.084 0.916 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.121 -9.489 -7.226 11.979 hybrid contribution -0.126 1.511 0.900 1.763 sum 0.995 -7.978 -6.326 10.230 Atomic orbital electron populations 1.21858 0.94936 1.01885 1.01485 1.21517 0.95067 0.96217 0.90178 0.93518 1.21622 0.95196 1.00920 0.96949 1.21576 0.96229 1.00591 0.97479 1.21624 0.99073 0.99822 0.94188 1.21513 0.88604 0.98311 0.94507 0.93475 1.21850 0.99705 1.00804 0.97791 1.62383 1.06061 1.54454 1.02774 1.22400 0.98803 0.96329 0.90087 1.19632 0.96804 0.91035 0.97044 1.21145 1.25288 0.97002 1.12284 0.92748 1.25015 0.95241 0.97382 0.96719 1.69956 1.34576 1.09587 1.39344 0.86680 0.79898 0.78268 0.83289 1.20247 1.21340 1.20252 0.91632 0.93158 0.92521 0.91712 0.92355 0.92542 0.92366 0.91720 0.92352 0.92554 0.93166 0.91637 0.91722 0.91921 0.96509 0.96555 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.52 37.16 0.32 -2.04 16 2 C 0.08 1.38 2.00 -67.72 -0.14 1.25 16 3 H 0.05 0.96 6.63 -51.93 -0.34 0.61 16 4 C -0.11 -1.57 5.37 -26.65 -0.14 -1.71 16 5 C -0.12 -1.67 6.00 -26.61 -0.16 -1.83 16 6 C -0.11 -1.58 5.37 -26.65 -0.14 -1.72 16 7 C 0.08 1.39 1.86 -67.72 -0.13 1.27 16 8 H 0.05 0.97 6.72 -51.93 -0.35 0.62 16 9 C -0.14 -2.37 8.51 37.16 0.32 -2.05 16 10 N -0.53 -9.86 4.53 -218.76 -0.99 -10.85 16 11 C 0.05 1.08 4.36 -3.83 -0.02 1.06 16 12 C -0.01 -0.18 4.20 -27.88 -0.12 -0.30 16 13 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H 0.06 1.21 6.66 -51.93 -0.35 0.86 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.22 6.42 -51.93 -0.33 0.88 16 33 H 0.06 1.37 6.11 -51.92 -0.32 1.06 16 34 H 0.06 1.33 6.38 -51.93 -0.33 0.99 16 35 H 0.02 0.46 6.48 -51.93 -0.34 0.13 16 36 H 0.02 0.45 6.45 -51.93 -0.33 0.12 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 278.73 15.07 4.20 4.20 Total: -1.00 -29.39 278.73 -8.16 -37.55 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.46 Total: -1.82 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -0.62 Total: -19.53 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.25 Total: -37.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.39 -8.16 -37.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019470777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.836 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds