Wall clock time and date at job start Sun Mar 29 2020 21:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.45933 * 2 1 4 4 C 1.53040 * 109.45439 * 240.03115 * 2 1 3 5 5 C 1.53119 * 109.27907 * 180.81039 * 4 2 1 6 6 C 1.53120 * 109.15896 * 57.65079 * 5 4 2 7 7 C 1.53041 * 109.28109 * 302.34749 * 6 5 4 8 8 H 1.09002 * 109.45751 * 299.16662 * 7 6 5 9 9 C 1.52995 * 109.46227 * 179.19990 * 7 6 5 10 10 N 1.46839 * 109.46058 * 119.97921 * 2 1 3 11 11 C 1.46898 * 111.00416 * 305.84344 * 10 2 1 12 12 C 1.52994 * 109.47339 * 295.51070 * 11 10 2 13 13 C 1.50705 * 109.47255 * 175.93172 * 12 11 10 14 14 H 1.08001 * 119.99741 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99919 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00473 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99996 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47398 * 59.99604 * 17 15 13 19 19 H 1.48498 * 109.47535 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47046 * 299.99888 * 17 15 13 21 21 H 1.09001 * 109.47258 * 307.07702 * 1 2 3 22 22 H 1.09002 * 109.47174 * 67.07704 * 1 2 3 23 23 H 1.08997 * 109.47250 * 187.07484 * 1 2 3 24 24 H 1.09002 * 109.50081 * 300.74730 * 4 2 1 25 25 H 1.09000 * 109.50532 * 60.86813 * 4 2 1 26 26 H 1.08994 * 109.52165 * 177.55397 * 5 4 2 27 27 H 1.09005 * 109.52262 * 297.75184 * 5 4 2 28 28 H 1.09000 * 109.50432 * 62.29037 * 6 5 4 29 29 H 1.09004 * 109.49885 * 182.40808 * 6 5 4 30 30 H 1.09002 * 109.46717 * 293.31994 * 9 7 6 31 31 H 1.08991 * 109.47607 * 53.32022 * 9 7 6 32 32 H 1.08996 * 109.47111 * 173.32699 * 9 7 6 33 33 H 1.09007 * 109.46745 * 55.51171 * 11 10 2 34 34 H 1.09004 * 109.47353 * 175.50593 * 11 10 2 35 35 H 1.08998 * 109.47283 * 295.93110 * 12 11 10 36 36 H 1.09004 * 109.46984 * 55.92941 * 12 11 10 37 37 H 0.96998 * 120.00696 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7208 -1.2501 5 6 3.5708 -0.7362 -1.2359 6 6 4.0546 -1.4191 0.0464 7 6 3.4864 -0.6780 1.2589 8 1 3.8404 0.3529 1.2530 9 6 3.9511 -1.3690 2.5424 10 7 2.0192 -0.6918 1.1993 11 6 1.4375 -0.1106 2.4165 12 6 1.9143 1.3350 2.5697 13 6 1.2399 1.9628 3.7623 14 1 0.5408 1.3881 4.3517 15 6 1.5147 3.2709 4.1002 16 7 2.3657 3.9708 3.3821 17 14 0.6782 4.0492 5.5780 18 1 1.0223 3.2825 6.8023 19 1 1.1411 5.4523 5.7268 20 1 -0.7934 4.0313 5.3801 21 1 -0.3634 0.6196 0.8199 22 1 -0.3634 0.4003 -0.9465 23 1 -0.3633 -1.0198 0.1266 24 1 1.6656 -1.7446 -1.2578 25 1 1.6893 -0.1980 -2.1400 26 1 3.9375 -1.2865 -2.1023 27 1 3.9457 0.2868 -1.2674 28 1 3.7122 -2.4539 0.0591 29 1 5.1437 -1.3951 0.0827 30 1 3.5005 -2.3595 2.6053 31 1 5.0369 -1.4638 2.5314 32 1 3.6468 -0.7761 3.4049 33 1 0.3500 -0.1288 2.3439 34 1 1.7534 -0.6913 3.2833 35 1 2.9945 1.3479 2.7147 36 1 1.6616 1.8981 1.6712 37 1 2.5593 4.8910 3.6201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019470777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:44 Heat of formation + Delta-G solvation = -40.770519 kcal Electronic energy + Delta-G solvation = -15021.716284 eV Core-core repulsion = 12797.061327 eV Total energy + Delta-G solvation = -2224.654957 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65243 -35.90318 -34.45524 -34.35731 -30.97196 -29.15982 -27.14671 -26.55216 -24.09058 -21.95213 -21.90920 -19.86703 -18.58508 -16.83425 -16.56743 -16.43058 -15.86471 -15.16830 -14.86972 -14.26567 -14.04620 -13.78803 -13.45464 -13.18968 -12.99564 -12.93202 -12.77698 -12.54197 -12.49594 -12.36653 -12.01865 -11.91970 -11.59104 -11.46506 -11.29293 -11.09968 -10.84140 -10.55174 -9.02892 -8.22163 -6.34769 1.36312 1.39560 1.47446 2.37568 3.09624 3.09803 3.90053 3.96322 4.03412 4.13795 4.42968 4.46269 4.53480 4.55108 4.73846 4.74105 4.79932 4.85828 4.91222 4.98368 5.05205 5.11565 5.12918 5.16424 5.25669 5.31112 5.33377 5.36477 5.48497 5.59884 5.62686 5.79932 6.07941 6.40063 6.40861 6.83400 7.34504 8.88411 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039202 B = 0.008504 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.084281 B = 3291.639409 C = 3524.470798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.005 0.995 4 C -0.102 4.102 5 C -0.122 4.122 6 C -0.102 4.102 7 C 0.073 3.927 8 H 0.005 0.995 9 C -0.138 4.138 10 N -0.520 5.520 11 C 0.065 3.935 12 C 0.009 3.991 13 C -0.541 4.541 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.266 1.266 21 H 0.035 0.965 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.066 0.934 34 H 0.065 0.935 35 H -0.013 1.013 36 H -0.014 1.014 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -10.790 -7.572 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 H 0.023 0.977 4 C -0.139 4.139 5 C -0.159 4.159 6 C -0.140 4.140 7 C -0.035 4.035 8 H 0.023 0.977 9 C -0.196 4.196 10 N -0.245 5.245 11 C -0.062 4.062 12 C -0.029 4.029 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.191 1.191 21 H 0.054 0.946 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.005 0.995 36 H 0.004 0.996 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.645 -11.131 -7.626 13.508 hybrid contribution 0.055 2.035 0.988 2.263 sum 0.700 -9.096 -6.638 11.283 Atomic orbital electron populations 1.21808 0.93943 1.02308 1.01515 1.21660 0.96014 0.94504 0.91430 0.97666 1.21594 0.95629 1.01327 0.95398 1.21611 0.95797 1.00113 0.98415 1.21597 0.99962 0.99893 0.92524 1.21645 0.87954 0.96792 0.97129 0.97683 1.21800 1.01205 1.00713 0.95847 1.62493 1.06713 1.53274 1.01971 1.22141 0.98872 0.93367 0.91855 1.19425 0.94751 0.93709 0.95027 1.21604 1.25585 0.97703 1.13094 0.92125 1.25988 0.95813 0.98002 0.99957 1.70107 1.36043 1.09969 1.41279 0.85513 0.79057 0.77240 0.79337 1.19063 1.20874 1.19081 0.94588 0.90991 0.90944 0.90173 0.90659 0.89304 0.94058 0.90172 0.90705 0.90929 0.91068 0.94674 0.91550 0.91698 0.99486 0.99612 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 8.52 71.98 0.61 -3.84 16 2 C 0.07 2.56 2.00 44.94 0.09 2.65 16 3 H 0.01 0.23 6.63 -2.38 -0.02 0.21 16 4 C -0.10 -2.71 5.37 30.65 0.16 -2.54 16 5 C -0.12 -3.10 6.00 30.67 0.18 -2.91 16 6 C -0.10 -2.73 5.37 30.65 0.16 -2.56 16 7 C 0.07 2.60 1.86 44.94 0.08 2.69 16 8 H 0.01 0.22 6.72 -2.39 -0.02 0.21 16 9 C -0.14 -4.50 8.51 71.98 0.61 -3.89 16 10 N -0.52 -19.36 4.53 -846.02 -3.83 -23.19 16 11 C 0.07 2.86 4.36 86.30 0.38 3.24 16 12 C 0.01 0.50 4.20 29.85 0.13 0.63 16 13 C -0.54 -31.62 9.11 25.60 0.23 -31.38 16 14 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.93 -58.38 13.29 21.44 0.28 -58.10 16 17 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H 0.03 1.34 6.66 -2.39 -0.02 1.33 16 22 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.03 1.33 6.42 -2.39 -0.02 1.31 16 33 H 0.07 2.87 6.11 -2.38 -0.01 2.86 16 34 H 0.06 2.80 6.38 -2.39 -0.02 2.78 16 35 H -0.01 -0.79 6.48 -2.39 -0.02 -0.80 16 36 H -0.01 -0.87 6.45 -2.39 -0.02 -0.88 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -65.51 278.73 2.60 -62.92 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.01 Total: 8.64 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 3.11 Total: -37.47 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -3.55 Total: -81.28 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -65.51 2.60 -62.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019470777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.146 kcal (2) G-P(sol) polarization free energy of solvation -65.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds