Wall clock time and date at job start Sun Mar 29 2020 21:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.45310 * 2 1 4 4 C 1.53035 * 109.46277 * 119.97159 * 2 1 3 5 5 C 1.53114 * 109.27862 * 179.19724 * 4 2 1 6 6 C 1.53121 * 109.16288 * 302.34614 * 5 4 2 7 7 C 1.53041 * 109.27578 * 57.65555 * 6 5 4 8 8 H 1.09000 * 109.45753 * 180.80748 * 7 6 5 9 9 C 1.52995 * 109.46123 * 60.83697 * 7 6 5 10 10 N 1.46845 * 109.52079 * 300.81981 * 7 6 5 11 11 C 1.46907 * 110.99752 * 185.83778 * 10 7 6 12 12 C 1.52999 * 109.46580 * 67.28523 * 11 10 7 13 13 C 1.50702 * 109.46685 * 175.17248 * 12 11 10 14 14 H 1.08002 * 120.00495 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99931 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00043 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00131 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47268 * 59.99824 * 17 15 13 19 19 H 1.48502 * 109.47418 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47331 * 299.99969 * 17 15 13 21 21 H 1.08999 * 109.46685 * 172.97287 * 1 2 3 22 22 H 1.09000 * 109.47143 * 292.97408 * 1 2 3 23 23 H 1.09007 * 109.46867 * 52.97746 * 1 2 3 24 24 H 1.09004 * 109.49995 * 59.25708 * 4 2 1 25 25 H 1.09001 * 109.50242 * 299.13913 * 4 2 1 26 26 H 1.09004 * 109.52358 * 182.44008 * 5 4 2 27 27 H 1.08998 * 109.52479 * 62.25688 * 5 4 2 28 28 H 1.08999 * 109.50322 * 297.71305 * 6 5 4 29 29 H 1.09002 * 109.50556 * 177.59716 * 6 5 4 30 30 H 1.09000 * 109.47486 * 299.94606 * 9 7 6 31 31 H 1.08998 * 109.47135 * 59.95030 * 9 7 6 32 32 H 1.09004 * 109.46607 * 179.97438 * 9 7 6 33 33 H 1.08995 * 109.46981 * 307.28811 * 11 10 7 34 34 H 1.09001 * 109.46680 * 187.28146 * 11 10 7 35 35 H 1.09006 * 109.47492 * 55.17541 * 12 11 10 36 36 H 1.08994 * 109.47397 * 295.17128 * 12 11 10 37 37 H 0.96999 * 119.99944 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5709 -0.7359 1.2356 6 6 4.0548 -1.4187 -0.0467 7 6 3.4865 -0.6775 -1.2591 8 1 3.8176 -1.1698 -2.1735 9 6 3.9832 0.7695 -1.2507 10 7 2.0194 -0.6917 -1.1994 11 6 1.4374 -0.1104 -2.4166 12 6 1.7353 -1.0212 -3.6093 13 6 1.0390 -0.4877 -4.8348 14 1 0.4433 0.4107 -4.7694 15 6 1.1625 -1.1467 -6.0396 16 7 1.8875 -2.2411 -6.1192 17 14 0.2990 -0.4859 -7.5585 18 1 0.7877 0.8861 -7.8483 19 1 0.5891 -1.3691 -8.7165 20 1 -1.1660 -0.4491 -7.3183 21 1 -0.3633 -1.0200 -0.1257 22 1 -0.3633 0.4011 0.9461 23 1 -0.3633 0.6188 -0.8206 24 1 1.6659 -1.7447 1.2576 25 1 1.6894 -0.1981 2.1399 26 1 3.9379 -1.2862 2.1021 27 1 3.9456 0.2871 1.2673 28 1 3.7126 -2.4535 -0.0594 29 1 5.1440 -1.3946 -0.0831 30 1 3.6519 1.2622 -0.3365 31 1 5.0722 0.7802 -1.2950 32 1 3.5788 1.2974 -2.1144 33 1 1.8721 0.8733 -2.5931 34 1 0.3586 -0.0143 -2.2933 35 1 1.3757 -2.0280 -3.3965 36 1 2.8105 -1.0491 -3.7856 37 1 2.3356 -2.5844 -5.3304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019470779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:46 Heat of formation + Delta-G solvation = -22.250215 kcal Electronic energy + Delta-G solvation = -14922.352724 eV Core-core repulsion = 12698.500868 eV Total energy + Delta-G solvation = -2223.851856 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54588 -34.36400 -33.05599 -32.55582 -29.27234 -27.43514 -26.35168 -24.27826 -22.75763 -21.13094 -20.37092 -18.12738 -16.70370 -15.51768 -15.36485 -14.66731 -13.98051 -13.69954 -13.48548 -13.08514 -12.88692 -12.35055 -12.19515 -11.83399 -11.80839 -11.56792 -11.34124 -11.17542 -10.84317 -10.61642 -10.44611 -10.36453 -10.09657 -9.85300 -9.73159 -9.42322 -8.50269 -8.25473 -7.62495 -6.30779 -3.98882 3.46254 3.48539 3.67188 4.37430 4.61387 4.96884 5.02921 5.05998 5.31881 5.46956 5.52131 5.61989 5.65159 5.72283 5.73767 5.85750 5.92262 6.01590 6.10851 6.12855 6.18257 6.26296 6.31395 6.39574 6.43123 6.49909 6.58040 6.75912 6.95206 7.41239 7.52516 7.82179 7.85391 8.31213 8.52527 8.94896 9.73302 11.10367 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045564 B = 0.007656 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.370755 B = 3656.417653 C = 3934.154628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 H 0.036 0.964 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.110 4.110 7 C 0.079 3.921 8 H 0.088 0.912 9 C -0.186 4.186 10 N -0.527 5.527 11 C 0.062 3.938 12 C 0.017 3.983 13 C -0.602 4.602 14 H 0.046 0.954 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 1.068 2.932 18 H -0.289 1.289 19 H -0.282 1.282 20 H -0.288 1.288 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.068 0.932 35 H 0.015 0.985 36 H 0.005 0.995 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 4.314 13.570 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 H 0.054 0.946 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.148 4.148 7 C -0.030 4.030 8 H 0.106 0.894 9 C -0.245 4.245 10 N -0.252 5.252 11 C -0.064 4.064 12 C -0.020 4.020 13 C -0.641 4.641 14 H 0.064 0.936 15 C -0.189 4.189 16 N -0.550 5.550 17 Si 0.896 3.104 18 H -0.216 1.216 19 H -0.208 1.208 20 H -0.215 1.215 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.033 0.967 36 H 0.023 0.977 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.601 3.542 11.985 12.600 hybrid contribution 0.526 1.229 1.570 2.062 sum 2.127 4.771 13.555 14.527 Atomic orbital electron populations 1.21909 0.94881 1.02725 1.00908 1.21577 0.95020 0.95529 0.91128 0.94572 1.21606 0.95331 1.01326 0.96435 1.21596 0.96042 1.00484 0.97658 1.21591 0.99185 1.00021 0.94002 1.21652 0.88065 0.94382 0.98865 0.89414 1.22475 1.01080 0.99103 1.01836 1.62284 1.05880 1.54772 1.02261 1.22296 0.98632 0.96481 0.89012 1.19187 0.96005 0.95179 0.91626 1.22023 1.33816 1.12911 0.95323 0.93577 1.25807 0.96710 0.94978 1.01365 1.70763 1.29873 1.20995 1.33330 0.83562 0.75737 0.75433 0.75622 1.21571 1.20775 1.21473 0.91744 0.92969 0.92350 0.91314 0.92362 0.92457 0.92357 0.91336 0.92161 0.92636 0.92722 0.92145 0.95961 0.91405 0.96694 0.97713 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.55 37.16 0.32 -1.82 16 2 C 0.08 1.17 2.15 -67.72 -0.15 1.03 16 3 H 0.04 0.57 6.19 -51.93 -0.32 0.24 16 4 C -0.11 -1.42 5.37 -26.65 -0.14 -1.57 16 5 C -0.12 -1.48 5.69 -26.61 -0.15 -1.64 16 6 C -0.11 -1.55 5.61 -26.65 -0.15 -1.70 16 7 C 0.08 1.35 2.78 -67.72 -0.19 1.16 16 8 H 0.09 1.72 6.37 -51.93 -0.33 1.39 16 9 C -0.19 -2.90 8.19 37.16 0.30 -2.60 16 10 N -0.53 -9.75 4.43 -218.76 -0.97 -10.72 16 11 C 0.06 1.36 4.50 -3.82 -0.02 1.34 16 12 C 0.02 0.46 4.13 -27.88 -0.12 0.34 16 13 C -0.60 -17.57 9.11 -34.44 -0.31 -17.88 16 14 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 15 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 16 N -0.91 -28.59 13.65 55.43 0.76 -27.84 16 17 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.90 6.51 -51.92 -0.34 0.56 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.80 4.80 -51.93 -0.25 0.55 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.05 6.40 -51.93 -0.33 0.72 16 33 H 0.02 0.49 6.16 -51.93 -0.32 0.17 16 34 H 0.07 1.48 5.74 -51.93 -0.30 1.18 16 35 H 0.01 0.42 8.01 -51.93 -0.42 0.01 16 36 H 0.00 0.13 6.56 -51.93 -0.34 -0.21 16 37 H 0.27 8.44 7.22 -40.82 -0.29 8.14 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -30.56 274.24 -8.03 -38.59 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.17 Total: -1.89 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.70 Total: -22.99 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.21 Total: -38.56 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.56 -8.03 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019470779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.340 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds