Wall clock time and date at job start Sun Mar 29 2020 21:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.45310 * 2 1 4 4 C 1.53035 * 109.46277 * 119.97159 * 2 1 3 5 5 C 1.53114 * 109.27862 * 179.19724 * 4 2 1 6 6 C 1.53121 * 109.16288 * 302.34614 * 5 4 2 7 7 C 1.53041 * 109.27578 * 57.65555 * 6 5 4 8 8 H 1.09000 * 109.45753 * 180.80748 * 7 6 5 9 9 C 1.52995 * 109.46123 * 60.83697 * 7 6 5 10 10 N 1.46845 * 109.52079 * 300.81981 * 7 6 5 11 11 C 1.46907 * 110.99752 * 185.83778 * 10 7 6 12 12 C 1.52999 * 109.46580 * 67.28523 * 11 10 7 13 13 C 1.50702 * 109.46685 * 175.17248 * 12 11 10 14 14 H 1.08002 * 120.00495 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99931 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00043 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00131 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47268 * 59.99824 * 17 15 13 19 19 H 1.48502 * 109.47418 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47331 * 299.99969 * 17 15 13 21 21 H 1.08999 * 109.46685 * 172.97287 * 1 2 3 22 22 H 1.09000 * 109.47143 * 292.97408 * 1 2 3 23 23 H 1.09007 * 109.46867 * 52.97746 * 1 2 3 24 24 H 1.09004 * 109.49995 * 59.25708 * 4 2 1 25 25 H 1.09001 * 109.50242 * 299.13913 * 4 2 1 26 26 H 1.09004 * 109.52358 * 182.44008 * 5 4 2 27 27 H 1.08998 * 109.52479 * 62.25688 * 5 4 2 28 28 H 1.08999 * 109.50322 * 297.71305 * 6 5 4 29 29 H 1.09002 * 109.50556 * 177.59716 * 6 5 4 30 30 H 1.09000 * 109.47486 * 299.94606 * 9 7 6 31 31 H 1.08998 * 109.47135 * 59.95030 * 9 7 6 32 32 H 1.09004 * 109.46607 * 179.97438 * 9 7 6 33 33 H 1.08995 * 109.46981 * 307.28811 * 11 10 7 34 34 H 1.09001 * 109.46680 * 187.28146 * 11 10 7 35 35 H 1.09006 * 109.47492 * 55.17541 * 12 11 10 36 36 H 1.08994 * 109.47397 * 295.17128 * 12 11 10 37 37 H 0.96999 * 119.99944 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5709 -0.7359 1.2356 6 6 4.0548 -1.4187 -0.0467 7 6 3.4865 -0.6775 -1.2591 8 1 3.8176 -1.1698 -2.1735 9 6 3.9832 0.7695 -1.2507 10 7 2.0194 -0.6917 -1.1994 11 6 1.4374 -0.1104 -2.4166 12 6 1.7353 -1.0212 -3.6093 13 6 1.0390 -0.4877 -4.8348 14 1 0.4433 0.4107 -4.7694 15 6 1.1625 -1.1467 -6.0396 16 7 1.8875 -2.2411 -6.1192 17 14 0.2990 -0.4859 -7.5585 18 1 0.7877 0.8861 -7.8483 19 1 0.5891 -1.3691 -8.7165 20 1 -1.1660 -0.4491 -7.3183 21 1 -0.3633 -1.0200 -0.1257 22 1 -0.3633 0.4011 0.9461 23 1 -0.3633 0.6188 -0.8206 24 1 1.6659 -1.7447 1.2576 25 1 1.6894 -0.1981 2.1399 26 1 3.9379 -1.2862 2.1021 27 1 3.9456 0.2871 1.2673 28 1 3.7126 -2.4535 -0.0594 29 1 5.1440 -1.3946 -0.0831 30 1 3.6519 1.2622 -0.3365 31 1 5.0722 0.7802 -1.2950 32 1 3.5788 1.2974 -2.1144 33 1 1.8721 0.8733 -2.5931 34 1 0.3586 -0.0143 -2.2933 35 1 1.3757 -2.0280 -3.3965 36 1 2.8105 -1.0491 -3.7856 37 1 2.3356 -2.5844 -5.3304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019470779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:46 Heat of formation + Delta-G solvation = -41.308070 kcal Electronic energy + Delta-G solvation = -14923.179135 eV Core-core repulsion = 12698.500868 eV Total energy + Delta-G solvation = -2224.678267 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87768 -36.22808 -34.51615 -34.10336 -31.03330 -28.92016 -27.50342 -26.20351 -24.41454 -22.48323 -21.92883 -19.42561 -18.91189 -16.96850 -16.76394 -15.91722 -15.68108 -15.28562 -15.04244 -14.72995 -14.31898 -13.85536 -13.55283 -13.45136 -13.17554 -13.00838 -12.70698 -12.60979 -12.49251 -12.11475 -12.00445 -11.84738 -11.74684 -11.35863 -11.06933 -10.99765 -10.67559 -10.52460 -9.09942 -8.71054 -6.40829 1.50677 1.59922 1.79331 2.55132 3.01248 3.14833 3.79858 3.87690 3.93482 4.09743 4.28752 4.38187 4.41876 4.44921 4.49415 4.52889 4.64994 4.72933 4.83320 4.93621 4.97701 5.03221 5.05732 5.08265 5.11019 5.24798 5.26810 5.34297 5.35399 5.43623 5.58371 5.93271 6.16316 6.28792 6.38929 6.57354 7.42122 8.69860 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045564 B = 0.007656 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.370755 B = 3656.417653 C = 3934.154628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 H 0.041 0.959 4 C -0.105 4.105 5 C -0.115 4.115 6 C -0.106 4.106 7 C 0.073 3.927 8 H 0.048 0.952 9 C -0.177 4.177 10 N -0.540 5.540 11 C 0.080 3.920 12 C 0.026 3.974 13 C -0.621 4.621 14 H 0.050 0.950 15 C -0.039 4.039 16 N -0.936 5.936 17 Si 1.119 2.881 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.268 1.268 21 H 0.050 0.950 22 H 0.084 0.916 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.019 0.981 34 H 0.066 0.934 35 H -0.015 1.015 36 H -0.016 1.016 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 5.671 15.149 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 H 0.059 0.941 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.143 4.143 7 C -0.036 4.036 8 H 0.066 0.934 9 C -0.236 4.236 10 N -0.265 5.265 11 C -0.047 4.047 12 C -0.011 4.011 13 C -0.659 4.659 14 H 0.068 0.932 15 C -0.236 4.236 16 N -0.573 5.573 17 Si 0.940 3.060 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.193 1.193 21 H 0.069 0.931 22 H 0.103 0.897 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.003 0.997 36 H 0.002 0.998 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.371 4.906 13.606 14.528 hybrid contribution 0.627 0.777 1.124 1.503 sum 1.997 5.682 14.730 15.913 Atomic orbital electron populations 1.21900 0.94401 1.01804 1.02097 1.21765 0.95535 0.95778 0.90551 0.94124 1.21614 0.95900 1.00839 0.95946 1.21596 0.95410 1.01142 0.97110 1.21565 1.00118 0.99048 0.93609 1.21687 0.87422 0.95618 0.98853 0.93378 1.22380 1.02073 0.97570 1.01532 1.62216 1.06845 1.55307 1.02095 1.21908 0.98727 0.95047 0.89061 1.19030 0.94228 0.94533 0.93355 1.22461 1.33845 1.13070 0.96512 0.93194 1.27501 0.96512 0.94415 1.05187 1.70906 1.31364 1.22439 1.32626 0.82928 0.75765 0.75689 0.71664 1.19350 1.20728 1.19258 0.93083 0.89744 0.93794 0.92171 0.89435 0.90007 0.91325 0.92547 0.90400 0.90721 0.90976 0.94723 0.96288 0.91530 0.99679 0.99752 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.55 71.98 0.62 -3.38 16 2 C 0.07 2.08 2.15 44.94 0.10 2.17 16 3 H 0.04 1.17 6.19 -2.39 -0.01 1.15 16 4 C -0.11 -2.42 5.37 30.64 0.16 -2.25 16 5 C -0.12 -2.44 5.69 30.67 0.17 -2.26 16 6 C -0.11 -2.82 5.61 30.65 0.17 -2.65 16 7 C 0.07 2.51 2.78 44.94 0.13 2.63 16 8 H 0.05 2.01 6.37 -2.39 -0.02 1.99 16 9 C -0.18 -5.36 8.19 71.98 0.59 -4.77 16 10 N -0.54 -20.15 4.43 -846.02 -3.75 -23.90 16 11 C 0.08 3.58 4.50 86.30 0.39 3.97 16 12 C 0.03 1.44 4.13 29.85 0.12 1.57 16 13 C -0.62 -37.12 9.11 25.60 0.23 -36.88 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 15 C -0.04 -2.34 5.46 84.66 0.46 -1.88 16 16 N -0.94 -60.36 13.65 21.45 0.29 -60.06 16 17 Si 1.12 51.63 29.90 68.60 2.05 53.68 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.04 1.32 6.51 -2.38 -0.02 1.30 16 24 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.35 6.56 -2.39 -0.02 1.33 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.96 4.80 -2.39 -0.01 1.95 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.03 1.21 6.40 -2.38 -0.02 1.19 16 33 H 0.02 0.86 6.16 -2.39 -0.01 0.84 16 34 H 0.07 2.97 5.74 -2.39 -0.01 2.95 16 35 H -0.02 -0.92 8.01 -2.38 -0.02 -0.94 16 36 H -0.02 -0.93 6.56 -2.39 -0.02 -0.95 16 37 H 0.25 16.72 7.22 -92.71 -0.67 16.05 16 Total: -1.00 -67.83 274.24 2.86 -64.96 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.12 Total: 9.06 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 3.14 Total: -43.74 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -3.45 Total: -83.96 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Total: -67.83 2.86 -64.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019470779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.655 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds