Wall clock time and date at job start Sun Mar 29 2020 21:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48504 * 109.46914 * 270.00208 * 3 2 1 5 5 H 1.48500 * 109.47315 * 29.99945 * 3 2 1 6 6 H 1.48497 * 109.46961 * 150.00083 * 3 2 1 7 7 C 1.38734 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00509 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.76193 * 100.00055 * 180.02562 * 9 7 2 11 11 N 1.31591 * 126.46709 * 0.14269 * 10 9 7 12 12 N 1.28413 * 110.49531 * 180.32099 * 11 10 9 13 13 N 1.28903 * 110.36966 * 359.72525 * 12 11 10 14 14 N 1.35491 * 126.46270 * 180.02562 * 10 9 7 15 15 C 1.46502 * 127.38981 * 359.96052 * 14 10 9 16 16 C 1.53000 * 117.49632 * 119.70937 * 15 14 10 17 17 C 1.53002 * 60.02940 * 107.47827 * 16 15 14 18 18 H 0.97011 * 120.00031 * 359.97438 * 1 2 3 19 19 H 1.08999 * 115.56079 * 334.02411 * 15 14 10 20 20 H 1.09002 * 117.49833 * 214.97932 * 16 15 14 21 21 H 1.09002 * 117.49953 * 359.97438 * 16 15 14 22 22 H 1.09000 * 117.49996 * 107.50493 * 17 16 15 23 23 H 1.08999 * 117.49664 * 252.51862 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5475 1.4401 0.7000 7 6 2.0096 -1.2015 -0.0005 8 1 3.0896 -1.2016 -0.0010 9 16 1.1285 -2.7275 -0.0005 10 6 2.4783 -3.8600 -0.0005 11 7 3.7576 -3.5521 0.0021 12 7 4.4762 -4.6163 -0.0055 13 7 3.7258 -5.6644 -0.0077 14 7 2.3946 -5.2124 -0.0010 15 6 1.1780 -6.0284 -0.0009 16 6 0.9655 -6.9801 -1.1799 17 6 1.3397 -7.5379 0.1948 18 1 -0.4851 0.8401 0.0004 19 1 0.2952 -5.5565 0.4304 20 1 -0.0571 -7.1342 -1.5243 21 1 1.7308 -6.9986 -1.9559 22 1 0.5632 -8.0592 0.7547 23 1 2.3511 -7.9232 0.3233 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019847655.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:00 Heat of formation + Delta-G solvation = 131.836249 kcal Electronic energy + Delta-G solvation = -11463.688466 eV Core-core repulsion = 9248.638728 eV Total energy + Delta-G solvation = -2215.049738 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.043 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.87752 -37.39684 -32.86256 -32.32825 -31.18559 -25.95667 -24.53005 -22.69162 -22.24584 -20.95200 -18.32474 -16.99788 -15.80341 -15.63904 -15.07942 -14.92887 -13.44422 -13.32476 -12.52708 -11.88850 -11.67249 -11.57517 -11.27071 -11.22790 -11.12435 -10.69508 -10.34537 -10.25487 -10.02974 -9.39099 -9.25011 -9.12519 -7.15179 -6.62926 -4.40624 1.67027 2.09539 2.88784 3.09600 3.16766 3.18104 3.25287 3.67190 3.87006 4.44053 4.68375 4.78147 4.83105 4.88928 5.47017 5.51919 5.69583 5.88242 6.01410 6.20669 6.27254 6.88743 7.42783 8.22668 8.89741 9.33873 10.44889 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.051485 B = 0.009093 C = 0.007898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.720335 B = 3078.720794 C = 3544.256119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.079 3.921 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.110 0.890 9 S 0.185 5.815 10 C 0.213 3.787 11 N -0.346 5.346 12 N -0.048 5.048 13 N -0.131 5.131 14 N -0.368 5.368 15 C 0.079 3.921 16 C -0.173 4.173 17 C -0.163 4.163 18 H 0.277 0.723 19 H 0.152 0.848 20 H 0.112 0.888 21 H 0.101 0.899 22 H 0.110 0.890 23 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.883 -8.756 -0.376 9.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.131 4.131 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.694 4.694 8 H 0.128 0.872 9 S 0.413 5.587 10 C -0.165 4.165 11 N -0.206 5.206 12 N -0.044 5.044 13 N -0.119 5.119 14 N -0.168 5.168 15 C -0.026 4.026 16 C -0.212 4.212 17 C -0.201 4.201 18 H 0.087 0.913 19 H 0.169 0.831 20 H 0.131 0.869 21 H 0.120 0.880 22 H 0.129 0.871 23 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.839 -9.121 -0.362 9.560 hybrid contribution 0.750 1.155 -0.007 1.378 sum -2.088 -7.966 -0.369 8.243 Atomic orbital electron populations 1.69908 1.06163 1.28921 1.45804 1.25117 0.95217 0.99847 0.92911 0.85868 0.79664 0.79559 0.78904 1.19731 1.20517 1.18818 1.23361 0.97499 0.89046 1.59481 0.87249 1.83593 0.96508 0.95439 1.83138 1.29066 1.01693 0.87650 0.98115 1.74962 0.99017 1.19998 1.26620 1.77665 1.24250 0.93285 1.09191 1.82125 0.83940 1.19357 1.26469 1.50671 1.06208 1.04125 1.55807 1.21893 0.85630 0.88987 1.06076 1.23458 1.03839 1.01584 0.92283 1.23332 1.04506 0.92833 0.99446 0.91275 0.83080 0.86938 0.88035 0.87132 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.18 13.22 55.49 0.73 -22.45 14 2 C 0.08 2.07 5.49 -17.47 -0.10 1.97 14 3 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 14 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 14 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 14 6 H -0.26 -5.80 7.11 56.52 0.40 -5.40 14 7 C -0.55 -14.61 9.38 30.92 0.29 -14.32 14 8 H 0.11 3.03 6.93 -52.49 -0.36 2.67 14 9 S 0.18 4.36 21.56 -107.50 -2.32 2.04 14 10 C 0.21 4.93 8.14 -89.05 -0.72 4.20 14 11 N -0.35 -8.71 11.00 30.53 0.34 -8.37 14 12 N -0.05 -1.14 13.38 60.35 0.81 -0.33 14 13 N -0.13 -2.80 13.45 60.35 0.81 -1.99 14 14 N -0.37 -7.35 4.02 -54.73 -0.22 -7.57 14 15 C 0.08 1.16 6.74 -67.89 -0.46 0.71 14 16 C -0.17 -2.02 10.45 -26.73 -0.28 -2.30 14 17 C -0.16 -1.85 10.23 -26.69 -0.27 -2.12 14 18 H 0.28 6.85 8.31 -40.82 -0.34 6.51 14 19 H 0.15 1.98 8.09 -51.93 -0.42 1.56 14 20 H 0.11 1.01 8.14 -51.93 -0.42 0.58 14 21 H 0.10 1.32 8.14 -51.93 -0.42 0.90 14 22 H 0.11 0.93 8.14 -51.93 -0.42 0.50 14 23 H 0.11 1.38 7.91 -51.93 -0.41 0.97 14 LS Contribution 233.58 15.07 3.52 3.52 Total: -1.00 -29.78 233.58 -4.49 -34.27 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -1.60 Total: -2.66 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.54 Total: -11.86 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 2.47 Total: -40.71 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -2.32 Total: 2.04 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.78 -4.49 -34.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019847655.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.109 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds