Wall clock time and date at job start Sun Mar 29 2020 21:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.53006 * 109.46977 * 240.00260 * 2 1 3 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 C 1.52997 * 109.47415 * 120.00118 * 2 1 3 9 9 H 1.09001 * 109.47375 * 179.97438 * 8 2 1 10 10 N 1.46896 * 109.46908 * 300.00200 * 8 2 1 11 11 C 1.46906 * 111.00138 * 204.99661 * 10 8 2 12 12 C 1.52998 * 109.47431 * 180.02562 * 11 10 8 13 13 C 1.50694 * 109.47075 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99787 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99993 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00242 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46985 * 90.00035 * 17 15 13 19 19 H 1.48504 * 109.47109 * 209.99736 * 17 15 13 20 20 H 1.48501 * 109.46988 * 329.99922 * 17 15 13 21 21 H 1.08992 * 109.47063 * 299.99832 * 1 2 3 22 22 H 1.08996 * 109.47407 * 60.00229 * 1 2 3 23 23 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46505 * 179.97438 * 4 2 1 25 25 H 1.08996 * 109.46884 * 60.00293 * 4 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 30 30 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 31 31 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 32 32 H 1.00899 * 111.00323 * 328.95312 * 10 8 2 33 33 H 1.08999 * 109.46835 * 300.00591 * 11 10 8 34 34 H 1.09001 * 109.46660 * 59.99818 * 11 10 8 35 35 H 1.09005 * 109.46917 * 300.00166 * 12 11 10 36 36 H 1.08998 * 109.46865 * 60.00218 * 12 11 10 37 37 H 0.96997 * 120.00160 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2491 8 6 2.0401 -0.7212 1.2492 9 1 3.1301 -0.7216 1.2489 10 7 1.5504 -0.0288 2.4486 11 6 2.4341 -0.2746 3.5961 12 6 1.8924 0.4605 4.8237 13 6 2.7992 0.2088 6.0006 14 1 3.6742 -0.4136 5.8848 15 6 2.5119 0.7731 7.2254 16 7 3.3037 0.5538 8.2524 17 14 0.9982 1.8491 7.4260 18 1 -0.1591 1.0066 7.8213 19 1 1.2507 2.8678 8.4766 20 1 0.6996 2.5282 6.1396 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 -0.7208 -1.2495 25 1 1.6767 -0.2073 -2.1392 26 1 1.8938 -2.6777 -2.1391 27 1 0.4401 -2.1637 -1.2493 28 1 1.6772 -3.9128 -0.0004 29 1 3.1301 -2.8849 -0.0001 30 1 0.4402 -2.1638 1.2492 31 1 1.8931 -2.6779 2.1392 32 1 1.4460 0.9602 2.2779 33 1 2.4735 -1.3444 3.8016 34 1 3.4360 0.0885 3.3674 35 1 1.8526 1.5303 4.6183 36 1 0.8906 0.0968 5.0522 37 1 3.1014 0.9505 9.1142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020052601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:48 Heat of formation + Delta-G solvation = -33.788515 kcal Electronic energy + Delta-G solvation = -14392.760350 eV Core-core repulsion = 12168.408155 eV Total energy + Delta-G solvation = -2224.352195 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.33590 -35.22019 -32.79871 -31.87092 -30.49828 -28.30074 -26.22761 -24.01056 -22.15125 -21.39776 -20.28945 -18.37227 -16.73603 -15.84681 -15.05764 -14.76205 -14.48995 -14.09137 -13.69995 -13.10903 -12.83038 -12.65941 -12.44059 -12.25044 -11.67097 -11.56983 -11.30346 -11.17831 -11.00244 -10.89204 -10.45013 -10.25407 -9.96849 -9.90036 -9.74517 -9.54741 -9.18945 -8.51140 -7.85254 -6.02103 -4.00181 3.34643 3.41198 3.46317 4.48444 4.52159 4.73147 4.74114 5.05278 5.23165 5.32561 5.35997 5.37056 5.49308 5.58843 5.62908 5.72979 5.83437 6.00088 6.01780 6.07713 6.09678 6.15082 6.24649 6.33319 6.39234 6.42950 6.46183 6.65681 6.84580 7.20515 7.43250 7.67952 7.81784 7.98170 8.56243 9.02287 9.60533 11.11360 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054607 B = 0.006195 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.627658 B = 4518.524192 C = 4786.759012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.109 4.109 8 C 0.092 3.908 9 H 0.037 0.963 10 N -0.690 5.690 11 C 0.074 3.926 12 C -0.010 4.010 13 C -0.520 4.520 14 H 0.070 0.930 15 C 0.066 3.934 16 N -0.905 5.905 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 H 0.064 0.936 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.334 0.666 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.012 0.988 36 H 0.020 0.980 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 -2.829 -18.731 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.147 4.147 8 C -0.018 4.018 9 H 0.055 0.945 10 N -0.320 5.320 11 C -0.054 4.054 12 C -0.047 4.047 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.544 5.544 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 H 0.083 0.917 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.030 0.970 36 H 0.039 0.961 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.016 -3.285 -18.359 19.313 hybrid contribution 0.136 1.118 0.101 1.131 sum -4.880 -2.167 -18.258 19.023 Atomic orbital electron populations 1.21835 0.94666 1.02155 1.01300 1.21267 0.96857 0.98649 0.94412 0.91761 1.21536 1.00361 0.95785 0.97309 1.21568 1.01040 0.95521 0.97607 1.21541 1.00581 0.98732 0.94868 1.21551 1.01490 0.94669 0.96974 1.21474 0.96533 0.94422 0.89356 0.94470 1.60632 1.51991 1.15101 1.04306 1.21981 0.92624 1.00704 0.90094 1.19542 0.97077 0.95144 0.92984 1.21089 1.10594 1.31261 0.92951 0.91172 1.25013 0.96545 0.96119 0.95774 1.69922 1.38053 1.45230 1.01214 0.86726 0.83561 0.80693 0.77974 1.20254 1.21533 1.19002 0.91662 0.93806 0.92154 0.92271 0.92216 0.92573 0.91664 0.92206 0.92368 0.91162 0.91992 0.84836 0.91858 0.96218 0.96958 0.96141 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.34 37.16 0.31 -1.32 16 2 C -0.09 -1.10 2.57 -90.62 -0.23 -1.33 16 3 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 4 C -0.11 -1.14 5.45 -26.73 -0.15 -1.28 16 5 C -0.12 -1.17 5.65 -26.73 -0.15 -1.32 16 6 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 7 C -0.11 -1.47 5.15 -26.73 -0.14 -1.61 16 8 C 0.09 1.32 2.18 -67.72 -0.15 1.17 16 9 H 0.04 0.57 7.80 -51.93 -0.41 0.17 16 10 N -0.69 -11.77 5.59 -106.72 -0.60 -12.36 16 11 C 0.07 1.54 5.42 -3.82 -0.02 1.52 16 12 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 13 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 17 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 21 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 22 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 31 H 0.06 0.93 7.45 -51.93 -0.39 0.54 16 32 H 0.33 5.45 8.19 -39.29 -0.32 5.13 16 33 H 0.06 1.35 7.44 -51.93 -0.39 0.96 16 34 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 35 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 36 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 280.02 15.07 4.22 4.22 Total: -1.00 -30.21 280.02 -8.04 -38.26 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.54 Total: -0.43 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -1.23 Total: -19.65 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.18 Total: -39.97 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.21 -8.04 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020052601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.467 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds