Wall clock time and date at job start Sun Mar 29 2020 21:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.53006 * 109.46977 * 240.00260 * 2 1 3 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 C 1.52997 * 109.47415 * 120.00118 * 2 1 3 9 9 H 1.09001 * 109.47375 * 179.97438 * 8 2 1 10 10 N 1.46896 * 109.46908 * 300.00200 * 8 2 1 11 11 C 1.46906 * 111.00138 * 204.99661 * 10 8 2 12 12 C 1.52998 * 109.47431 * 180.02562 * 11 10 8 13 13 C 1.50694 * 109.47075 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99787 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99993 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00242 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46985 * 90.00035 * 17 15 13 19 19 H 1.48504 * 109.47109 * 209.99736 * 17 15 13 20 20 H 1.48501 * 109.46988 * 329.99922 * 17 15 13 21 21 H 1.08992 * 109.47063 * 299.99832 * 1 2 3 22 22 H 1.08996 * 109.47407 * 60.00229 * 1 2 3 23 23 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46505 * 179.97438 * 4 2 1 25 25 H 1.08996 * 109.46884 * 60.00293 * 4 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 30 30 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 31 31 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 32 32 H 1.00899 * 111.00323 * 328.95312 * 10 8 2 33 33 H 1.08999 * 109.46835 * 300.00591 * 11 10 8 34 34 H 1.09001 * 109.46660 * 59.99818 * 11 10 8 35 35 H 1.09005 * 109.46917 * 300.00166 * 12 11 10 36 36 H 1.08998 * 109.46865 * 60.00218 * 12 11 10 37 37 H 0.96997 * 120.00160 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2491 8 6 2.0401 -0.7212 1.2492 9 1 3.1301 -0.7216 1.2489 10 7 1.5504 -0.0288 2.4486 11 6 2.4341 -0.2746 3.5961 12 6 1.8924 0.4605 4.8237 13 6 2.7992 0.2088 6.0006 14 1 3.6742 -0.4136 5.8848 15 6 2.5119 0.7731 7.2254 16 7 3.3037 0.5538 8.2524 17 14 0.9982 1.8491 7.4260 18 1 -0.1591 1.0066 7.8213 19 1 1.2507 2.8678 8.4766 20 1 0.6996 2.5282 6.1396 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 -0.7208 -1.2495 25 1 1.6767 -0.2073 -2.1392 26 1 1.8938 -2.6777 -2.1391 27 1 0.4401 -2.1637 -1.2493 28 1 1.6772 -3.9128 -0.0004 29 1 3.1301 -2.8849 -0.0001 30 1 0.4402 -2.1638 1.2492 31 1 1.8931 -2.6779 2.1392 32 1 1.4460 0.9602 2.2779 33 1 2.4735 -1.3444 3.8016 34 1 3.4360 0.0885 3.3674 35 1 1.8526 1.5303 4.6183 36 1 0.8906 0.0968 5.0522 37 1 3.1014 0.9505 9.1142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020052601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:48 Heat of formation + Delta-G solvation = -52.732155 kcal Electronic energy + Delta-G solvation = -14393.581808 eV Core-core repulsion = 12168.408155 eV Total energy + Delta-G solvation = -2225.173652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37215 -36.75241 -34.81031 -32.90251 -32.10636 -29.66309 -27.31727 -25.76782 -23.21474 -22.53919 -22.05233 -19.37781 -18.95170 -16.98148 -16.34732 -16.28019 -15.93230 -15.46620 -14.81828 -14.79716 -14.50693 -13.86953 -13.60804 -13.48340 -13.12220 -12.95957 -12.55392 -12.48692 -12.24249 -11.98407 -11.89611 -11.73262 -11.67209 -11.42865 -11.14960 -10.89349 -10.83016 -10.77955 -9.29018 -8.31464 -6.36397 1.36598 1.37860 1.50787 2.35797 3.04076 3.26147 3.76679 3.83196 4.10666 4.30470 4.37057 4.40638 4.48363 4.51456 4.56202 4.64042 4.68232 4.85929 4.94136 4.99548 5.08263 5.11170 5.16374 5.23060 5.28581 5.33819 5.42551 5.45938 5.49206 5.49661 5.62737 5.71202 6.19135 6.25883 6.57054 6.72801 7.28660 8.85445 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054607 B = 0.006195 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.627658 B = 4518.524192 C = 4786.759012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.108 4.108 8 C 0.090 3.910 9 H 0.025 0.975 10 N -0.686 5.686 11 C 0.089 3.911 12 C -0.002 4.002 13 C -0.536 4.536 14 H 0.029 0.971 15 C 0.005 3.995 16 N -0.952 5.952 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.247 1.247 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.340 0.660 33 H 0.051 0.949 34 H 0.011 0.989 35 H 0.020 0.980 36 H 0.021 0.979 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 -2.085 -20.822 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.146 4.146 8 C -0.020 4.020 9 H 0.043 0.957 10 N -0.317 5.317 11 C -0.040 4.040 12 C -0.040 4.040 13 C -0.575 4.575 14 H 0.047 0.953 15 C -0.191 4.191 16 N -0.592 5.592 17 Si 0.779 3.221 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.170 1.170 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.159 0.841 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.779 -2.549 -20.479 21.722 hybrid contribution 0.769 0.820 0.752 1.352 sum -6.010 -1.729 -19.727 20.695 Atomic orbital electron populations 1.21801 0.94071 1.02236 1.01489 1.21250 0.97263 0.98566 0.93721 0.91616 1.21537 1.00310 0.95995 0.96902 1.21563 1.01313 0.95173 0.97350 1.21523 1.00390 0.99207 0.94279 1.21536 1.01376 0.94196 0.97461 1.21589 0.95949 0.95037 0.89400 0.95661 1.60567 1.50863 1.15852 1.04426 1.21628 0.92640 0.99324 0.90409 1.19421 0.95992 0.95905 0.92710 1.21419 1.10236 1.30682 0.95117 0.95252 1.26021 1.00209 0.97705 0.95203 1.70072 1.40384 1.46739 1.02013 0.85569 0.78939 0.78728 0.78827 1.19233 1.20805 1.17002 0.93132 0.91954 0.92123 0.92439 0.90373 0.90805 0.91185 0.91164 0.92673 0.91201 0.94368 0.84125 0.93069 0.97112 0.96215 0.96025 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.34 71.98 0.60 -2.21 16 2 C -0.09 -1.91 2.57 -10.79 -0.03 -1.94 16 3 H 0.07 1.40 8.12 -2.39 -0.02 1.39 16 4 C -0.11 -1.90 5.45 30.60 0.17 -1.74 16 5 C -0.12 -1.93 5.65 30.59 0.17 -1.76 16 6 C -0.12 -2.36 5.92 30.59 0.18 -2.17 16 7 C -0.11 -2.83 5.15 30.59 0.16 -2.68 16 8 C 0.09 2.49 2.18 44.92 0.10 2.59 16 9 H 0.03 0.77 7.80 -2.39 -0.02 0.75 16 10 N -0.69 -22.90 5.59 -491.57 -2.75 -25.65 16 11 C 0.09 3.73 5.42 86.30 0.47 4.20 16 12 C 0.00 -0.12 4.30 29.85 0.13 0.01 16 13 C -0.54 -32.06 9.66 25.60 0.25 -31.81 16 14 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 15 C 0.01 0.33 5.47 84.65 0.46 0.79 16 16 N -0.95 -60.94 13.96 21.45 0.30 -60.65 16 17 Si 0.96 45.42 27.47 68.60 1.88 47.31 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 21 H 0.05 1.17 7.48 -2.39 -0.02 1.15 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.06 1.22 4.81 -2.39 -0.01 1.21 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.12 6.43 -2.39 -0.02 1.11 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.84 6.43 -2.39 -0.02 1.82 16 31 H 0.04 1.16 7.45 -2.38 -0.02 1.14 16 32 H 0.34 10.64 8.19 -89.69 -0.73 9.90 16 33 H 0.05 2.25 7.44 -2.39 -0.02 2.23 16 34 H 0.01 0.46 8.06 -2.39 -0.02 0.44 16 35 H 0.02 0.93 7.20 -2.38 -0.02 0.91 16 36 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 37 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -65.51 280.02 2.32 -63.19 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.23 Total: 12.53 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 2.66 Total: -36.73 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -2.45 Total: -86.30 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -65.51 2.32 -63.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020052601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.455 kcal (2) G-P(sol) polarization free energy of solvation -65.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds