Wall clock time and date at job start Sun Mar 29 2020 21:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 N 1.46898 * 109.47123 * 179.97438 * 8 7 6 11 11 C 1.46901 * 110.99830 * 274.99462 * 10 8 7 12 12 C 1.53000 * 109.47220 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47507 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99469 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00224 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99577 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00035 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46938 * 90.00134 * 17 15 13 19 19 H 1.48503 * 109.46830 * 210.00012 * 17 15 13 20 20 H 1.48492 * 109.47027 * 330.00003 * 17 15 13 21 21 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 23 23 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 25 25 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 28 28 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 29 29 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 30 30 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 32 32 H 1.00900 * 111.00405 * 151.04786 * 10 8 7 33 33 H 1.08992 * 109.47513 * 300.00058 * 11 10 8 34 34 H 1.09010 * 109.46900 * 60.00523 * 11 10 8 35 35 H 1.09002 * 109.47086 * 300.00500 * 12 11 10 36 36 H 1.09002 * 109.47270 * 60.00353 * 12 11 10 37 37 H 0.97004 * 119.99227 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 6 2.0395 -0.7214 1.2494 9 1 1.6758 -1.7490 1.2493 10 7 1.5497 -0.0293 2.4490 11 6 1.4863 -0.9450 3.5960 12 6 0.9737 -0.1897 4.8238 13 6 0.9092 -1.1288 6.0007 14 1 1.2040 -2.1613 5.8843 15 6 0.4730 -0.6702 7.2256 16 7 0.4163 -1.4900 8.2524 17 14 -0.0375 1.1154 7.4266 18 1 -1.4878 1.2511 7.1378 19 1 0.2331 1.5538 8.8194 20 1 0.7365 1.9607 6.4824 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.6767 -0.2076 -2.1392 25 1 1.6767 -1.7490 -1.2490 26 1 3.9334 -1.2354 -2.1389 27 1 3.9337 0.3057 -1.2486 28 1 3.7158 -2.4708 0.0005 29 1 5.1695 -1.4441 0.0006 30 1 3.9328 -1.2356 2.1398 31 1 3.9331 0.3056 1.2498 32 1 0.6523 0.3990 2.2784 33 1 0.8098 -1.7682 3.3668 34 1 2.4816 -1.3391 3.8017 35 1 1.6507 0.6334 5.0529 36 1 -0.0214 0.2048 4.6185 37 1 0.1097 -1.1672 9.1142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020052604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:51 Heat of formation + Delta-G solvation = -36.442661 kcal Electronic energy + Delta-G solvation = -14337.827788 eV Core-core repulsion = 12113.360501 eV Total energy + Delta-G solvation = -2224.467287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.12971 -35.17541 -32.94185 -32.37057 -30.49027 -28.16388 -26.11910 -24.03528 -21.69622 -21.06488 -20.32656 -19.47635 -16.73579 -15.75831 -14.80501 -14.59276 -14.29929 -14.23527 -13.94219 -13.25898 -12.84731 -12.55078 -12.36380 -12.29919 -11.88848 -11.56063 -11.41190 -11.20826 -10.94066 -10.83018 -10.49539 -10.37117 -10.03715 -9.88974 -9.79539 -9.54286 -9.18964 -8.51132 -7.84600 -6.02022 -4.00056 3.33836 3.41208 3.47783 4.48714 4.51142 4.71910 4.76337 4.96406 5.12995 5.30303 5.32714 5.42400 5.51168 5.55614 5.60259 5.68469 5.76580 5.86910 6.01679 6.03365 6.12938 6.15729 6.25544 6.29361 6.31451 6.37556 6.43095 6.59260 6.83937 7.20873 7.42561 7.69355 7.82497 7.99108 8.56348 9.02312 9.60664 11.11426 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049777 B = 0.006260 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.375049 B = 4471.827653 C = 4736.396065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.107 4.107 8 C 0.093 3.907 9 H 0.038 0.962 10 N -0.694 5.694 11 C 0.074 3.926 12 C -0.010 4.010 13 C -0.520 4.520 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.263 1.263 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.335 0.665 33 H 0.019 0.981 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.007 0.993 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.436 2.820 -18.827 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.146 4.146 8 C -0.018 4.018 9 H 0.056 0.944 10 N -0.326 5.326 11 C -0.054 4.054 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.188 1.188 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.155 0.845 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.026 0.974 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.000 3.056 -18.452 19.126 hybrid contribution -1.120 0.275 0.105 1.158 sum 2.879 3.331 -18.347 18.868 Atomic orbital electron populations 1.21903 0.95585 1.01812 1.01771 1.21286 0.95192 1.00283 0.94463 0.90571 1.21562 0.95579 1.00543 0.97227 1.21533 0.95636 1.00746 0.97693 1.21546 1.00006 0.99378 0.94817 1.21522 0.94989 1.00997 0.97061 1.21493 0.95201 0.95717 0.89347 0.94367 1.60663 1.33240 1.34349 1.04375 1.21973 1.00019 0.93323 0.90063 1.19549 0.95517 0.96736 0.92981 1.21087 1.44154 0.97691 0.92943 0.91158 1.25007 0.95057 0.97589 0.95784 1.69924 1.47884 1.35338 1.01250 0.86747 0.79207 0.85892 0.77305 1.20413 1.21434 1.18755 0.92830 0.92172 0.92650 0.92183 0.92162 0.92430 0.92037 0.92301 0.92158 0.91846 0.91540 0.84522 0.96224 0.91826 0.95693 0.97430 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.96 37.15 0.33 -1.40 16 2 C -0.09 -1.11 2.39 -90.62 -0.22 -1.33 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.12 5.20 -26.73 -0.14 -1.26 16 5 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 6 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 7 C -0.11 -1.47 5.43 -26.73 -0.15 -1.62 16 8 C 0.09 1.34 1.97 -67.71 -0.13 1.20 16 9 H 0.04 0.59 7.80 -51.93 -0.40 0.19 16 10 N -0.69 -12.08 6.31 -106.72 -0.67 -12.75 16 11 C 0.07 1.56 5.42 -3.82 -0.02 1.54 16 12 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 13 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 14 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 17 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.72 6.21 -51.93 -0.32 0.40 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.96 7.45 -51.93 -0.39 0.57 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.33 5.55 6.17 -39.29 -0.24 5.30 16 33 H 0.02 0.41 8.05 -51.93 -0.42 0.00 16 34 H 0.06 1.36 7.44 -51.92 -0.39 0.98 16 35 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 36 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 284.74 15.07 4.29 4.29 Total: -1.00 -30.40 284.74 -8.21 -38.61 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.74 Total: -0.42 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -1.19 Total: -19.68 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.10 Total: -40.36 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.40 -8.21 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020052604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.165 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds