Wall clock time and date at job start Sun Mar 29 2020 21:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46524 * 2 1 4 4 C 1.52995 * 109.47494 * 240.00437 * 2 1 3 5 5 C 1.53007 * 109.46910 * 299.99667 * 4 2 1 6 6 C 1.53000 * 109.46980 * 300.00272 * 5 4 2 7 7 C 1.53005 * 109.47491 * 59.99711 * 6 5 4 8 8 H 1.09000 * 109.46514 * 60.00153 * 7 6 5 9 9 C 1.52997 * 109.47137 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.46998 * 300.00294 * 7 6 5 11 11 N 1.46905 * 109.47133 * 179.97438 * 10 7 6 12 12 C 1.46902 * 110.99800 * 154.99741 * 11 10 7 13 13 C 1.50706 * 109.46580 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00193 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99398 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 20 20 H 1.48498 * 109.47295 * 60.00420 * 17 15 13 21 21 H 1.09001 * 109.47484 * 300.00050 * 1 2 3 22 22 H 1.09005 * 109.47161 * 60.00283 * 1 2 3 23 23 H 1.09002 * 109.46896 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47360 * 180.02562 * 4 2 1 25 25 H 1.08996 * 109.47676 * 59.99533 * 4 2 1 26 26 H 1.08991 * 109.47318 * 180.02562 * 5 4 2 27 27 H 1.08996 * 109.46808 * 59.99906 * 5 4 2 28 28 H 1.09000 * 109.47117 * 300.00233 * 6 5 4 29 29 H 1.09003 * 109.47502 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.46776 * 180.02562 * 9 7 6 31 31 H 1.08999 * 109.47224 * 299.99669 * 9 7 6 32 32 H 1.09000 * 109.47298 * 60.00628 * 9 7 6 33 33 H 1.09004 * 109.47127 * 299.99787 * 10 7 6 34 34 H 1.00891 * 110.99910 * 31.04456 * 11 10 7 35 35 H 1.09000 * 109.47263 * 60.00269 * 12 11 10 36 36 H 1.08992 * 109.47049 * 300.00118 * 12 11 10 37 37 H 0.97000 * 119.99706 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 0.0000 7 6 1.5301 -2.1637 1.2493 8 1 0.4401 -2.1638 1.2492 9 6 2.0406 -2.8846 2.4985 10 6 2.0399 -0.7212 1.2493 11 7 1.5498 -0.0285 2.4485 12 6 2.4333 1.0882 2.8094 13 6 1.8991 1.7734 4.0409 14 1 0.9942 1.4149 4.5087 15 6 2.5665 2.8574 4.5707 16 7 3.6688 3.2936 4.0013 17 14 1.9048 3.7062 6.0975 18 1 2.7979 4.8352 6.4624 19 1 0.5400 4.2238 5.8239 20 1 1.8503 2.7350 7.2195 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1301 -0.7215 -1.2490 25 1 1.6767 -0.2074 -2.1392 26 1 1.8938 -2.6776 -2.1389 27 1 0.4401 -2.1637 -1.2493 28 1 3.1301 -2.8848 0.0001 29 1 1.6765 -3.9125 0.0003 30 1 1.6768 -2.3710 3.3885 31 1 1.6776 -3.9123 2.4988 32 1 3.1306 -2.8840 2.4984 33 1 3.1300 -0.7211 1.2493 34 1 1.4452 -0.6707 3.2195 35 1 2.4730 1.8010 1.9858 36 1 3.4351 0.7086 3.0100 37 1 4.0125 2.8525 3.2087 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:23 Heat of formation + Delta-G solvation = -35.766518 kcal Electronic energy + Delta-G solvation = -14859.583198 eV Core-core repulsion = 12635.145230 eV Total energy + Delta-G solvation = -2224.437967 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37920 -34.69670 -33.01734 -32.38593 -29.79195 -26.42715 -26.25702 -24.71253 -22.44193 -20.89111 -20.76441 -18.22224 -16.86136 -15.43123 -14.81444 -14.49745 -14.16107 -13.80444 -13.63948 -12.98948 -12.57207 -12.52407 -12.12757 -11.86932 -11.75868 -11.51595 -11.24949 -10.90820 -10.77973 -10.71149 -10.54213 -10.47684 -10.08993 -10.00561 -9.81010 -9.45872 -8.55744 -8.38013 -7.30067 -6.34590 -4.03034 3.45829 3.48585 3.67000 4.55174 4.82900 4.90844 4.96657 5.23408 5.33166 5.42262 5.52202 5.63269 5.65035 5.68454 5.78009 5.82623 5.94219 6.05754 6.07328 6.14767 6.21814 6.27586 6.35526 6.39888 6.45114 6.62945 6.68511 6.81914 6.95611 7.05619 7.22653 7.87380 8.23127 8.55181 8.62559 8.90998 9.68876 11.05169 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045173 B = 0.007535 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.687414 B = 3714.946583 C = 3935.522449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 H 0.066 0.934 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.094 4.094 8 H 0.078 0.922 9 C -0.151 4.151 10 C 0.096 3.904 11 N -0.678 5.678 12 C 0.186 3.814 13 C -0.594 4.594 14 H 0.055 0.945 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 1.073 2.927 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.289 1.289 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.331 0.669 35 H 0.017 0.983 36 H -0.027 1.027 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -11.176 -8.147 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.148 4.148 7 C -0.113 4.113 8 H 0.096 0.904 9 C -0.209 4.209 10 C -0.014 4.014 11 N -0.310 5.310 12 C 0.059 3.941 13 C -0.633 4.633 14 H 0.073 0.927 15 C -0.190 4.190 16 N -0.551 5.551 17 Si 0.901 3.099 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.215 1.215 21 H 0.090 0.910 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.150 0.850 35 H 0.035 0.965 36 H -0.010 1.010 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.124 -9.521 -7.417 12.754 hybrid contribution 0.596 -1.696 -0.759 1.951 sum -3.528 -11.217 -8.176 14.322 Atomic orbital electron populations 1.21748 0.95083 1.00928 1.01487 1.21021 0.96538 0.99113 0.93111 0.91529 1.21588 1.00206 0.95492 0.98005 1.21553 1.01007 0.95846 0.97205 1.21556 1.00507 0.98329 0.94437 1.21311 1.01115 0.94648 0.94213 0.90353 1.21890 1.00977 0.99801 0.98233 1.21453 0.96062 0.91511 0.92386 1.60603 1.52056 1.12539 1.05823 1.19654 0.89414 0.88860 0.96207 1.22021 1.12307 1.16882 1.12046 0.92699 1.25851 0.94897 0.95429 1.02815 1.70790 1.20883 1.42077 1.21356 0.83492 0.75495 0.76139 0.74799 1.20850 1.21394 1.21514 0.90971 0.94430 0.93245 0.92560 0.92370 0.92718 0.91704 0.92382 0.92417 0.92041 0.92950 0.93090 0.95232 0.84976 0.96472 1.00984 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.34 37.16 0.31 -1.84 16 2 C -0.08 -1.32 2.80 -90.62 -0.25 -1.58 16 3 H 0.07 1.29 7.45 -51.93 -0.39 0.90 16 4 C -0.11 -1.57 5.45 -26.73 -0.15 -1.72 16 5 C -0.12 -1.42 5.65 -26.73 -0.15 -1.57 16 6 C -0.11 -1.37 5.20 -26.73 -0.14 -1.51 16 7 C -0.09 -1.38 2.11 -90.62 -0.19 -1.57 16 8 H 0.08 1.16 6.43 -51.93 -0.33 0.83 16 9 C -0.15 -2.12 8.96 37.16 0.33 -1.79 16 10 C 0.10 1.74 1.66 -67.71 -0.11 1.63 16 11 N -0.68 -14.72 5.53 -107.99 -0.60 -15.31 16 12 C 0.19 4.94 4.55 -4.97 -0.02 4.91 16 13 C -0.59 -17.30 9.32 -34.44 -0.32 -17.62 16 14 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 16 N -0.91 -28.49 13.65 55.43 0.76 -27.74 16 17 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H 0.07 1.33 7.60 -51.93 -0.39 0.94 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.71 4.81 -51.93 -0.25 0.46 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.93 6.21 -51.93 -0.32 0.61 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.59 7.80 -51.93 -0.41 0.18 16 34 H 0.33 6.98 6.16 -39.30 -0.24 6.74 16 35 H 0.02 0.49 7.30 -51.93 -0.38 0.11 16 36 H -0.03 -0.77 7.92 -51.93 -0.41 -1.18 16 37 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 LS Contribution 278.19 15.07 4.19 4.19 Total: -1.00 -30.31 278.19 -7.86 -38.17 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.34 Total: 2.36 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -0.79 Total: -22.35 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.16 Total: -43.05 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.31 -7.86 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.408 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds