Wall clock time and date at job start Sun Mar 29 2020 21:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46524 * 2 1 4 4 C 1.52995 * 109.47494 * 240.00437 * 2 1 3 5 5 C 1.53007 * 109.46910 * 299.99667 * 4 2 1 6 6 C 1.53000 * 109.46980 * 300.00272 * 5 4 2 7 7 C 1.53005 * 109.47491 * 59.99711 * 6 5 4 8 8 H 1.09000 * 109.46514 * 60.00153 * 7 6 5 9 9 C 1.52997 * 109.47137 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.46998 * 300.00294 * 7 6 5 11 11 N 1.46905 * 109.47133 * 179.97438 * 10 7 6 12 12 C 1.46902 * 110.99800 * 154.99741 * 11 10 7 13 13 C 1.50706 * 109.46580 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00193 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99398 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 20 20 H 1.48498 * 109.47295 * 60.00420 * 17 15 13 21 21 H 1.09001 * 109.47484 * 300.00050 * 1 2 3 22 22 H 1.09005 * 109.47161 * 60.00283 * 1 2 3 23 23 H 1.09002 * 109.46896 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47360 * 180.02562 * 4 2 1 25 25 H 1.08996 * 109.47676 * 59.99533 * 4 2 1 26 26 H 1.08991 * 109.47318 * 180.02562 * 5 4 2 27 27 H 1.08996 * 109.46808 * 59.99906 * 5 4 2 28 28 H 1.09000 * 109.47117 * 300.00233 * 6 5 4 29 29 H 1.09003 * 109.47502 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.46776 * 180.02562 * 9 7 6 31 31 H 1.08999 * 109.47224 * 299.99669 * 9 7 6 32 32 H 1.09000 * 109.47298 * 60.00628 * 9 7 6 33 33 H 1.09004 * 109.47127 * 299.99787 * 10 7 6 34 34 H 1.00891 * 110.99910 * 31.04456 * 11 10 7 35 35 H 1.09000 * 109.47263 * 60.00269 * 12 11 10 36 36 H 1.08992 * 109.47049 * 300.00118 * 12 11 10 37 37 H 0.97000 * 119.99706 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 0.0000 7 6 1.5301 -2.1637 1.2493 8 1 0.4401 -2.1638 1.2492 9 6 2.0406 -2.8846 2.4985 10 6 2.0399 -0.7212 1.2493 11 7 1.5498 -0.0285 2.4485 12 6 2.4333 1.0882 2.8094 13 6 1.8991 1.7734 4.0409 14 1 0.9942 1.4149 4.5087 15 6 2.5665 2.8574 4.5707 16 7 3.6688 3.2936 4.0013 17 14 1.9048 3.7062 6.0975 18 1 2.7979 4.8352 6.4624 19 1 0.5400 4.2238 5.8239 20 1 1.8503 2.7350 7.2195 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1301 -0.7215 -1.2490 25 1 1.6767 -0.2074 -2.1392 26 1 1.8938 -2.6776 -2.1389 27 1 0.4401 -2.1637 -1.2493 28 1 3.1301 -2.8848 0.0001 29 1 1.6765 -3.9125 0.0003 30 1 1.6768 -2.3710 3.3885 31 1 1.6776 -3.9123 2.4988 32 1 3.1306 -2.8840 2.4984 33 1 3.1300 -0.7211 1.2493 34 1 1.4452 -0.6707 3.2195 35 1 2.4730 1.8010 1.9858 36 1 3.4351 0.7086 3.0100 37 1 4.0125 2.8525 3.2087 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:23 Heat of formation + Delta-G solvation = -54.627933 kcal Electronic energy + Delta-G solvation = -14860.401090 eV Core-core repulsion = 12635.145230 eV Total energy + Delta-G solvation = -2225.255860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.69665 -36.55341 -34.59432 -34.00133 -31.25221 -28.22536 -27.40167 -26.40011 -24.40393 -22.30682 -21.99603 -19.56636 -19.00243 -16.95448 -16.21178 -15.95677 -15.64599 -15.56981 -15.12794 -14.57054 -14.16845 -13.97226 -13.51804 -13.45362 -13.14712 -12.81338 -12.77274 -12.56917 -12.44216 -12.09323 -12.01080 -11.93115 -11.73789 -11.19916 -11.10635 -10.78413 -10.67410 -10.63680 -9.18215 -8.73981 -6.44760 1.51386 1.60680 1.80346 2.54189 3.10853 3.40253 3.68483 3.79481 3.96675 4.18110 4.30116 4.35941 4.43537 4.50386 4.56955 4.69516 4.71377 4.77710 4.85903 4.94707 4.98902 5.00567 5.08328 5.13724 5.19722 5.26662 5.30046 5.38841 5.45576 5.50752 5.65202 5.77454 6.01435 6.37562 6.56239 6.73068 7.38510 8.65228 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045173 B = 0.007535 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.687414 B = 3714.946583 C = 3935.522449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 H 0.026 0.974 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.107 4.107 7 C -0.087 4.087 8 H 0.083 0.917 9 C -0.151 4.151 10 C 0.093 3.907 11 N -0.674 5.674 12 C 0.202 3.798 13 C -0.611 4.611 14 H 0.056 0.944 15 C -0.039 4.039 16 N -0.936 5.936 17 Si 1.125 2.875 18 H -0.283 1.283 19 H -0.269 1.269 20 H -0.266 1.266 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.005 0.995 34 H 0.335 0.665 35 H -0.010 1.010 36 H -0.054 1.054 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 -12.880 -8.521 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.101 4.101 3 H 0.045 0.955 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.145 4.145 7 C -0.106 4.106 8 H 0.102 0.898 9 C -0.208 4.208 10 C -0.017 4.017 11 N -0.306 5.306 12 C 0.073 3.927 13 C -0.649 4.649 14 H 0.075 0.925 15 C -0.236 4.236 16 N -0.574 5.574 17 Si 0.945 3.055 18 H -0.208 1.208 19 H -0.195 1.195 20 H -0.191 1.191 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.154 0.846 35 H 0.008 0.992 36 H -0.036 1.036 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.604 -11.261 -7.818 14.810 hybrid contribution 1.075 -1.186 -0.693 1.744 sum -4.529 -12.447 -8.511 15.744 Atomic orbital electron populations 1.21670 0.93912 1.02117 1.00741 1.21033 0.97498 0.97256 0.94292 0.95540 1.21558 0.99851 0.96950 0.96488 1.21556 1.01516 0.94098 0.97951 1.21564 1.00306 0.99468 0.93162 1.21284 1.01239 0.92017 0.96050 0.89843 1.21887 1.00495 1.01259 0.97161 1.21613 0.94761 0.94135 0.91171 1.60531 1.50740 1.12161 1.07186 1.19292 0.88867 0.89894 0.94618 1.22391 1.12386 1.17302 1.12783 0.92528 1.27550 0.94302 0.96211 1.05530 1.70930 1.22281 1.42687 1.21461 0.82851 0.75574 0.75561 0.71542 1.20788 1.19458 1.19128 0.94122 0.92779 0.90979 0.93221 0.90899 0.90196 0.90772 0.92853 0.89632 0.93704 0.89940 0.93879 0.97699 0.84551 0.99174 1.03649 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 8.34 71.98 0.60 -3.33 16 2 C -0.08 -2.78 2.80 -10.80 -0.03 -2.81 16 3 H 0.03 1.09 7.45 -2.38 -0.02 1.07 16 4 C -0.11 -2.87 5.45 30.60 0.17 -2.70 16 5 C -0.11 -2.32 5.65 30.60 0.17 -2.14 16 6 C -0.11 -2.33 5.20 30.60 0.16 -2.17 16 7 C -0.09 -2.41 2.11 -10.79 -0.02 -2.43 16 8 H 0.08 2.26 6.43 -2.39 -0.02 2.24 16 9 C -0.15 -4.01 8.96 71.98 0.64 -3.36 16 10 C 0.09 3.44 1.66 44.91 0.07 3.51 16 11 N -0.67 -30.30 5.53 -495.56 -2.74 -33.04 16 12 C 0.20 11.30 4.55 85.56 0.39 11.69 16 13 C -0.61 -36.46 9.32 25.60 0.24 -36.22 16 14 H 0.06 3.30 7.81 -2.91 -0.02 3.27 16 15 C -0.04 -2.32 5.46 84.66 0.46 -1.86 16 16 N -0.94 -60.05 13.65 21.45 0.29 -59.76 16 17 Si 1.12 51.55 29.90 68.60 2.05 53.60 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 21 H 0.04 1.50 7.60 -2.39 -0.02 1.48 16 22 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.07 1.88 4.81 -2.39 -0.01 1.87 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.41 6.43 -2.39 -0.02 1.40 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.33 6.21 -2.39 -0.01 1.31 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.00 0.21 7.80 -2.38 -0.02 0.19 16 34 H 0.33 14.45 6.16 -89.70 -0.55 13.90 16 35 H -0.01 -0.59 7.30 -2.39 -0.02 -0.61 16 36 H -0.05 -3.25 7.92 -2.39 -0.02 -3.26 16 37 H 0.25 16.48 7.22 -92.71 -0.67 15.81 16 Total: -1.00 -67.63 278.19 3.03 -64.60 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.57 Total: 16.44 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 2.86 Total: -41.84 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -2.45 Total: -92.80 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -67.63 3.03 -64.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.968 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds