Wall clock time and date at job start Sun Mar 29 2020 21:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46700 * 2 1 4 4 C 1.52998 * 109.47000 * 120.00206 * 2 1 3 5 5 C 1.53007 * 109.47075 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47092 * 300.00179 * 5 4 2 7 7 C 1.53003 * 109.47248 * 59.99625 * 6 5 4 8 8 H 1.09000 * 109.46685 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.46882 * 60.00327 * 7 6 5 10 10 C 1.52997 * 109.47305 * 300.00314 * 7 6 5 11 11 N 1.46898 * 109.47153 * 180.02562 * 10 7 6 12 12 C 1.46900 * 111.00086 * 80.42511 * 11 10 7 13 13 C 1.50706 * 109.47106 * 177.17497 * 12 11 10 14 14 H 1.08000 * 119.99609 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00209 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99623 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47123 * 270.00101 * 17 15 13 19 19 H 1.48502 * 109.47096 * 30.00734 * 17 15 13 20 20 H 1.48499 * 109.46852 * 150.00104 * 17 15 13 21 21 H 1.08997 * 109.47092 * 173.53596 * 1 2 3 22 22 H 1.08998 * 109.47355 * 293.53653 * 1 2 3 23 23 H 1.09011 * 109.47369 * 53.53503 * 1 2 3 24 24 H 1.08995 * 109.47425 * 59.99952 * 4 2 1 25 25 H 1.09001 * 109.47020 * 299.99592 * 4 2 1 26 26 H 1.08997 * 109.47170 * 179.97438 * 5 4 2 27 27 H 1.09007 * 109.46756 * 59.99713 * 5 4 2 28 28 H 1.09000 * 109.46633 * 300.00225 * 6 5 4 29 29 H 1.09001 * 109.47277 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47521 * 299.99901 * 9 7 6 31 31 H 1.09002 * 109.47461 * 60.00237 * 9 7 6 32 32 H 1.09005 * 109.47079 * 179.97438 * 9 7 6 33 33 H 1.09000 * 109.46795 * 299.99748 * 10 7 6 34 34 H 1.00899 * 111.00180 * 204.37905 * 11 10 7 35 35 H 1.08991 * 109.47064 * 57.17690 * 12 11 10 36 36 H 1.08999 * 109.46737 * 297.17430 * 12 11 10 37 37 H 0.96995 * 119.99205 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4415 0.0003 7 6 3.5705 -0.7203 -1.2490 8 1 3.9339 -1.2341 -2.1389 9 6 4.0800 0.7224 -1.2486 10 6 2.0405 -0.7208 -1.2493 11 7 1.5508 -0.0288 -2.4490 12 6 1.5910 -0.9141 -3.6206 13 6 1.0180 -0.1941 -4.8141 14 1 0.6603 0.8199 -4.7125 15 6 0.9514 -0.8294 -6.0360 16 7 1.3876 -2.0640 -6.1597 17 14 0.2406 0.0628 -7.5151 18 1 -1.2220 -0.1841 -7.5863 19 1 0.4907 1.5205 -7.3811 20 1 0.8882 -0.4386 -8.7538 21 1 -0.3633 -1.0211 -0.1157 22 1 -0.3634 0.4104 0.9421 23 1 -0.3634 0.6108 -0.8265 24 1 1.6766 -1.7489 1.2492 25 1 1.6766 -0.2074 2.1392 26 1 3.9333 -1.2342 2.1397 27 1 3.9329 0.3071 1.2498 28 1 3.7175 -2.4693 0.0000 29 1 5.1705 -1.4416 0.0007 30 1 3.7163 1.2360 -0.3586 31 1 5.1700 0.7228 -1.2484 32 1 3.7170 1.2361 -2.1388 33 1 1.6776 -1.7486 -1.2496 34 1 0.6212 0.3351 -2.3025 35 1 1.0029 -1.8095 -3.4197 36 1 2.6233 -1.1962 -3.8275 37 1 1.3404 -2.5110 -7.0192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:25 Heat of formation + Delta-G solvation = -32.988240 kcal Electronic energy + Delta-G solvation = -14827.012091 eV Core-core repulsion = 12602.694599 eV Total energy + Delta-G solvation = -2224.317492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28086 -34.46483 -32.90732 -32.26387 -29.80682 -26.68084 -26.18746 -24.88828 -22.33279 -20.68657 -20.62617 -18.12261 -16.46765 -15.16841 -14.76174 -14.67855 -14.31222 -13.84941 -13.56727 -12.72120 -12.50659 -12.30839 -12.04706 -11.89538 -11.63837 -11.42756 -11.23875 -10.89174 -10.86433 -10.66953 -10.48597 -10.42898 -10.12725 -9.86187 -9.70777 -9.31572 -9.05189 -8.44639 -7.16537 -5.99941 -4.01524 3.33201 3.39235 3.43845 4.45474 4.91652 4.98757 5.04475 5.34616 5.36140 5.41434 5.59810 5.70969 5.73425 5.77322 5.86377 5.90453 6.04434 6.13311 6.14875 6.22431 6.30055 6.35378 6.43954 6.48488 6.53196 6.71985 6.78455 6.92475 7.04931 7.36722 7.51947 7.83678 8.19840 8.49707 8.71504 9.08820 9.63294 11.11205 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045202 B = 0.007529 C = 0.007066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.291353 B = 3718.210814 C = 3961.537330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.080 4.080 8 H 0.069 0.931 9 C -0.135 4.135 10 C 0.099 3.901 11 N -0.685 5.685 12 C 0.196 3.804 13 C -0.513 4.513 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.273 1.273 20 H -0.287 1.287 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.328 0.672 35 H -0.017 1.017 36 H 0.028 0.972 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 2.634 13.447 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.099 4.099 8 H 0.087 0.913 9 C -0.192 4.192 10 C -0.012 4.012 11 N -0.317 5.317 12 C 0.069 3.931 13 C -0.552 4.552 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.198 1.198 20 H -0.213 1.213 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.147 0.853 35 H 0.001 0.999 36 H 0.046 0.954 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.926 2.782 13.154 13.759 hybrid contribution -1.109 -0.364 -0.767 1.397 sum 1.816 2.418 12.387 12.751 Atomic orbital electron populations 1.21875 0.95868 1.01743 1.01323 1.21286 0.94939 1.00439 0.94490 0.90415 1.21559 0.95544 1.00460 0.97289 1.21554 0.95707 1.00901 0.97442 1.21585 0.99723 0.99068 0.94902 1.21027 0.95272 0.96669 0.96906 0.91263 1.21745 0.98543 0.96445 1.02474 1.21417 0.94408 0.95282 0.90092 1.60696 1.29290 1.38738 1.02992 1.19549 0.96744 0.90193 0.86639 1.21219 1.40176 1.00060 0.93752 0.92095 1.24987 0.95708 0.94931 0.98959 1.69971 1.47207 1.11716 1.24848 0.86512 0.78967 0.79971 0.82040 1.20782 1.19801 1.21273 0.93065 0.93130 0.92047 0.92395 0.92540 0.92833 0.91758 0.92545 0.92459 0.93314 0.94543 0.90933 0.95338 0.85281 0.99922 0.95427 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.77 37.16 0.33 -1.77 16 2 C -0.09 -1.36 2.13 -90.62 -0.19 -1.55 16 3 H 0.08 1.16 6.43 -51.92 -0.33 0.83 16 4 C -0.11 -1.39 5.20 -26.73 -0.14 -1.53 16 5 C -0.12 -1.44 5.65 -26.73 -0.15 -1.59 16 6 C -0.11 -1.60 5.45 -26.73 -0.15 -1.74 16 7 C -0.08 -1.35 2.75 -90.62 -0.25 -1.60 16 8 H 0.07 1.36 7.23 -51.93 -0.38 0.98 16 9 C -0.13 -2.16 8.34 37.15 0.31 -1.85 16 10 C 0.10 1.78 1.66 -67.72 -0.11 1.67 16 11 N -0.69 -14.74 5.54 -108.00 -0.60 -15.33 16 12 C 0.20 5.19 5.25 -4.97 -0.03 5.17 16 13 C -0.51 -14.72 9.29 -34.44 -0.32 -15.04 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.90 6.53 -51.92 -0.34 0.56 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.77 6.43 -51.92 -0.33 0.43 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.70 4.81 -51.93 -0.25 0.45 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.34 7.61 -51.93 -0.39 0.94 16 33 H 0.03 0.57 7.83 -51.93 -0.41 0.16 16 34 H 0.33 6.84 6.29 -39.29 -0.25 6.59 16 35 H -0.02 -0.49 8.00 -51.93 -0.42 -0.90 16 36 H 0.03 0.79 7.23 -51.93 -0.38 0.42 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 279.28 15.07 4.21 4.21 Total: -1.00 -29.39 279.28 -7.87 -37.26 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.40 Total: 1.73 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -0.80 Total: -18.33 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.14 Total: -41.79 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.39 -7.87 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.275 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds