Wall clock time and date at job start Sun Mar 29 2020 21:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46700 * 2 1 4 4 C 1.52998 * 109.47000 * 120.00206 * 2 1 3 5 5 C 1.53007 * 109.47075 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47092 * 300.00179 * 5 4 2 7 7 C 1.53003 * 109.47248 * 59.99625 * 6 5 4 8 8 H 1.09000 * 109.46685 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.46882 * 60.00327 * 7 6 5 10 10 C 1.52997 * 109.47305 * 300.00314 * 7 6 5 11 11 N 1.46898 * 109.47153 * 180.02562 * 10 7 6 12 12 C 1.46900 * 111.00086 * 80.42511 * 11 10 7 13 13 C 1.50706 * 109.47106 * 177.17497 * 12 11 10 14 14 H 1.08000 * 119.99609 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00209 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99623 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47123 * 270.00101 * 17 15 13 19 19 H 1.48502 * 109.47096 * 30.00734 * 17 15 13 20 20 H 1.48499 * 109.46852 * 150.00104 * 17 15 13 21 21 H 1.08997 * 109.47092 * 173.53596 * 1 2 3 22 22 H 1.08998 * 109.47355 * 293.53653 * 1 2 3 23 23 H 1.09011 * 109.47369 * 53.53503 * 1 2 3 24 24 H 1.08995 * 109.47425 * 59.99952 * 4 2 1 25 25 H 1.09001 * 109.47020 * 299.99592 * 4 2 1 26 26 H 1.08997 * 109.47170 * 179.97438 * 5 4 2 27 27 H 1.09007 * 109.46756 * 59.99713 * 5 4 2 28 28 H 1.09000 * 109.46633 * 300.00225 * 6 5 4 29 29 H 1.09001 * 109.47277 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47521 * 299.99901 * 9 7 6 31 31 H 1.09002 * 109.47461 * 60.00237 * 9 7 6 32 32 H 1.09005 * 109.47079 * 179.97438 * 9 7 6 33 33 H 1.09000 * 109.46795 * 299.99748 * 10 7 6 34 34 H 1.00899 * 111.00180 * 204.37905 * 11 10 7 35 35 H 1.08991 * 109.47064 * 57.17690 * 12 11 10 36 36 H 1.08999 * 109.46737 * 297.17430 * 12 11 10 37 37 H 0.96995 * 119.99205 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4415 0.0003 7 6 3.5705 -0.7203 -1.2490 8 1 3.9339 -1.2341 -2.1389 9 6 4.0800 0.7224 -1.2486 10 6 2.0405 -0.7208 -1.2493 11 7 1.5508 -0.0288 -2.4490 12 6 1.5910 -0.9141 -3.6206 13 6 1.0180 -0.1941 -4.8141 14 1 0.6603 0.8199 -4.7125 15 6 0.9514 -0.8294 -6.0360 16 7 1.3876 -2.0640 -6.1597 17 14 0.2406 0.0628 -7.5151 18 1 -1.2220 -0.1841 -7.5863 19 1 0.4907 1.5205 -7.3811 20 1 0.8882 -0.4386 -8.7538 21 1 -0.3633 -1.0211 -0.1157 22 1 -0.3634 0.4104 0.9421 23 1 -0.3634 0.6108 -0.8265 24 1 1.6766 -1.7489 1.2492 25 1 1.6766 -0.2074 2.1392 26 1 3.9333 -1.2342 2.1397 27 1 3.9329 0.3071 1.2498 28 1 3.7175 -2.4693 0.0000 29 1 5.1705 -1.4416 0.0007 30 1 3.7163 1.2360 -0.3586 31 1 5.1700 0.7228 -1.2484 32 1 3.7170 1.2361 -2.1388 33 1 1.6776 -1.7486 -1.2496 34 1 0.6212 0.3351 -2.3025 35 1 1.0029 -1.8095 -3.4197 36 1 2.6233 -1.1962 -3.8275 37 1 1.3404 -2.5110 -7.0192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:25 Heat of formation + Delta-G solvation = -51.028876 kcal Electronic energy + Delta-G solvation = -14827.794392 eV Core-core repulsion = 12602.694599 eV Total energy + Delta-G solvation = -2225.099793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60048 -36.25822 -34.45266 -33.95412 -31.28525 -28.54427 -27.33808 -26.47247 -24.16698 -22.11200 -21.92263 -19.46501 -18.58313 -16.79096 -16.61528 -16.06696 -15.62688 -15.26968 -15.00536 -14.38600 -14.02950 -13.84534 -13.59169 -13.26078 -13.13574 -12.84898 -12.74071 -12.58881 -12.38063 -12.11744 -11.97965 -11.94533 -11.66374 -11.34937 -11.11120 -10.84757 -10.70312 -10.63114 -9.04281 -8.23755 -6.35381 1.39019 1.41258 1.53074 2.38659 3.09274 3.53891 3.76901 3.86991 4.06320 4.25279 4.37982 4.44671 4.51617 4.57406 4.64885 4.77777 4.81635 4.96519 5.01103 5.05885 5.06641 5.15588 5.19385 5.25766 5.29142 5.33490 5.38233 5.46690 5.53338 5.58900 5.60959 5.76222 6.03868 6.50293 6.76361 6.93475 7.36020 8.88125 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045202 B = 0.007529 C = 0.007066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.291353 B = 3718.210814 C = 3961.537330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.111 4.111 7 C -0.083 4.083 8 H 0.027 0.973 9 C -0.127 4.127 10 C 0.095 3.905 11 N -0.679 5.679 12 C 0.215 3.785 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.264 1.264 20 H -0.281 1.281 21 H 0.040 0.960 22 H 0.080 0.920 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.003 0.997 34 H 0.333 0.667 35 H -0.050 1.050 36 H -0.004 1.004 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 4.105 14.938 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.101 0.899 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.102 4.102 8 H 0.046 0.954 9 C -0.184 4.184 10 C -0.015 4.015 11 N -0.311 5.311 12 C 0.087 3.913 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.799 3.201 18 H -0.196 1.196 19 H -0.188 1.188 20 H -0.207 1.207 21 H 0.059 0.941 22 H 0.099 0.901 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.152 0.848 35 H -0.032 1.032 36 H 0.014 0.986 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.739 4.262 14.670 15.521 hybrid contribution -1.027 -0.867 -1.207 1.806 sum 1.713 3.395 13.463 13.990 Atomic orbital electron populations 1.21871 0.95304 1.01099 1.02438 1.21253 0.95443 1.00288 0.93467 0.89935 1.21567 0.95963 1.00203 0.96811 1.21554 0.95208 1.01375 0.96969 1.21553 1.00566 0.98497 0.94237 1.21033 0.94406 0.97637 0.97117 0.95422 1.21662 0.99520 0.95200 1.01989 1.21572 0.95311 0.94138 0.90457 1.60608 1.29581 1.37795 1.03111 1.19131 0.93922 0.89662 0.88592 1.21576 1.40661 1.00397 0.94794 0.91723 1.25995 0.95783 0.95701 1.02369 1.70113 1.48100 1.13424 1.25905 0.85308 0.78421 0.78856 0.77562 1.19597 1.18778 1.20680 0.94113 0.90144 0.93258 0.92867 0.89739 0.90334 0.90830 0.93266 0.91050 0.91033 0.92960 0.94011 0.97894 0.84772 1.03248 0.98608 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 8.77 71.98 0.63 -3.33 16 2 C -0.09 -2.38 2.13 -10.80 -0.02 -2.41 16 3 H 0.08 2.25 6.43 -2.38 -0.02 2.24 16 4 C -0.11 -2.37 5.20 30.60 0.16 -2.21 16 5 C -0.11 -2.37 5.65 30.60 0.17 -2.20 16 6 C -0.11 -2.94 5.45 30.59 0.17 -2.77 16 7 C -0.08 -2.87 2.75 -10.80 -0.03 -2.90 16 8 H 0.03 1.16 7.23 -2.39 -0.02 1.14 16 9 C -0.13 -3.96 8.34 71.98 0.60 -3.36 16 10 C 0.10 3.54 1.66 44.91 0.07 3.61 16 11 N -0.68 -30.40 5.54 -495.59 -2.75 -33.14 16 12 C 0.21 12.10 5.25 85.56 0.45 12.55 16 13 C -0.54 -31.62 9.29 25.60 0.24 -31.38 16 14 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 16 N -0.94 -58.26 13.29 21.45 0.28 -57.97 16 17 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.40 6.53 -2.38 -0.02 1.39 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.44 6.43 -2.38 -0.02 1.42 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.90 4.81 -2.39 -0.01 1.89 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.55 7.61 -2.38 -0.02 1.53 16 33 H 0.00 0.13 7.83 -2.39 -0.02 0.11 16 34 H 0.33 14.24 6.29 -89.69 -0.56 13.68 16 35 H -0.05 -3.08 8.00 -2.39 -0.02 -3.10 16 36 H 0.00 -0.26 7.23 -2.39 -0.02 -0.28 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -65.62 279.28 2.93 -62.70 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.46 Total: 15.07 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 2.90 Total: -33.96 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -2.46 Total: -91.12 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -65.62 2.93 -62.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.667 kcal (2) G-P(sol) polarization free energy of solvation -65.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds