Wall clock time and date at job start Sun Mar 29 2020 21:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29031 * 124.91251 * 2 1 4 4 C 1.31779 * 117.12188 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74976 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47194 * 275.02238 * 5 4 3 7 7 C 1.46902 * 110.99800 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.46577 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00196 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00338 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99426 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47555 * 90.00165 * 12 10 8 14 14 H 1.48503 * 109.46814 * 210.00053 * 12 10 8 15 15 H 1.48496 * 109.47318 * 329.99545 * 12 10 8 16 16 C 1.33639 * 114.50176 * 0.22806 * 4 3 2 17 17 S 1.70979 * 124.91889 * 180.02562 * 2 1 3 18 18 H 1.08994 * 109.47364 * 90.00261 * 1 2 3 19 19 H 1.09004 * 109.46384 * 210.00184 * 1 2 3 20 20 H 1.09001 * 109.46987 * 329.99918 * 1 2 3 21 21 H 1.09002 * 109.47213 * 155.02176 * 5 4 3 22 22 H 1.09001 * 109.47086 * 35.01932 * 5 4 3 23 23 H 1.00898 * 110.99743 * 303.94953 * 6 5 4 24 24 H 1.09000 * 109.46894 * 60.00165 * 7 6 5 25 25 H 1.09000 * 109.47263 * 299.99731 * 7 6 5 26 26 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 27 27 H 1.08005 * 126.04040 * 179.77132 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0012 6 7 4.7562 2.4754 -1.3810 7 6 5.7085 3.5932 -1.4207 8 6 5.9147 4.0269 -2.8492 9 1 5.3904 3.5229 -3.6476 10 6 6.7720 5.0678 -3.1366 11 7 7.4092 5.6826 -2.1642 12 14 7.0270 5.6059 -4.9072 13 1 6.0349 6.6551 -5.2536 14 1 8.3994 6.1505 -5.0662 15 1 6.8497 4.4398 -5.8093 16 6 3.9354 -0.4005 -0.0058 17 16 2.4857 -1.4020 -0.0006 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3632 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 5.4749 1.6954 0.4325 22 1 4.1275 2.8479 0.5886 23 1 5.0691 1.7134 -1.9637 24 1 6.6609 3.2743 -0.9971 25 1 5.3140 4.4274 -0.8407 26 1 8.0120 6.4151 -2.3665 27 1 4.9546 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020253417.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:13 Heat of formation + Delta-G solvation = 37.372748 kcal Electronic energy + Delta-G solvation = -11352.833165 eV Core-core repulsion = 9237.227525 eV Total energy + Delta-G solvation = -2115.605640 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.69745 -35.28898 -32.80072 -31.71388 -28.52434 -27.24846 -24.84688 -22.29091 -21.33655 -19.53047 -17.62468 -16.32489 -15.13558 -14.96021 -14.67388 -14.26801 -13.68358 -13.38176 -12.98616 -12.46009 -12.35191 -12.16498 -11.77766 -11.27407 -10.94374 -10.70695 -10.62714 -9.95320 -9.44972 -9.27008 -9.21187 -8.58544 -8.46367 -7.30343 -6.02395 -4.04207 0.84308 1.47440 1.83188 2.99484 3.33660 3.39068 3.43205 4.19284 4.44894 5.03735 5.29645 5.31758 5.33576 5.38165 5.44723 5.69613 5.79759 5.99893 6.21544 6.40637 7.22336 7.40081 7.78106 7.99092 8.12271 8.37676 8.59100 9.04537 9.60459 11.08783 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.058920 B = 0.005616 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.110186 B = 4984.575188 C = 5079.675936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.046 3.954 3 N -0.452 5.452 4 C 0.092 3.908 5 C 0.129 3.871 6 N -0.681 5.681 7 C 0.194 3.806 8 C -0.513 4.513 9 H 0.062 0.938 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.900 3.100 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.259 4.259 17 S 0.086 5.914 18 H 0.085 0.915 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.037 0.963 22 H 0.083 0.917 23 H 0.328 0.672 24 H -0.012 1.012 25 H 0.031 0.969 26 H 0.262 0.738 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 -13.942 5.422 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.232 4.232 3 N -0.167 5.167 4 C -0.040 4.040 5 C -0.004 4.004 6 N -0.311 5.311 7 C 0.068 3.932 8 C -0.552 4.552 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.728 3.272 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.398 4.398 17 S 0.339 5.661 18 H 0.103 0.897 19 H 0.096 0.904 20 H 0.107 0.893 21 H 0.055 0.945 22 H 0.101 0.899 23 H 0.145 0.855 24 H 0.006 0.994 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.788 -13.928 5.457 18.443 hybrid contribution 1.758 0.591 -0.758 2.003 sum -9.030 -13.337 4.699 16.778 Atomic orbital electron populations 1.20413 0.85412 1.03878 1.03829 1.27083 1.01692 0.90704 1.03769 1.66103 1.04797 1.30985 1.14778 1.20462 0.90137 0.94168 0.99202 1.20454 0.93045 0.92932 0.93929 1.60654 1.52798 1.11852 1.05832 1.19596 0.87843 0.88073 0.97700 1.21170 1.24891 1.16652 0.92501 0.91954 1.24988 0.95688 0.96319 0.97583 1.69962 1.28973 1.23253 1.31569 0.86460 0.77240 0.78880 0.84595 1.20573 1.21289 1.19864 1.26813 1.02733 0.95717 1.14571 1.83720 0.98790 1.13669 1.69930 0.89656 0.90415 0.89313 0.94460 0.89912 0.85533 0.99417 0.95130 0.92890 0.80807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.46 36.01 0.38 -0.33 15 2 C 0.05 0.63 7.39 -13.45 -0.10 0.53 15 3 N -0.45 -7.87 10.53 -8.06 -0.08 -7.95 15 4 C 0.09 1.59 6.25 -84.23 -0.53 1.06 15 5 C 0.13 2.47 6.12 -4.97 -0.03 2.44 15 6 N -0.68 -15.51 6.48 -116.33 -0.75 -16.26 15 7 C 0.19 5.23 5.44 -4.97 -0.03 5.21 15 8 C -0.51 -14.93 9.32 -34.44 -0.32 -15.25 15 9 H 0.06 1.79 7.81 -52.49 -0.41 1.38 15 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 11 N -0.90 -27.18 13.29 55.43 0.74 -26.44 15 12 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 15 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 16 C -0.26 -3.70 11.11 29.12 0.32 -3.38 15 17 S 0.09 1.02 23.18 -107.50 -2.49 -1.47 15 18 H 0.08 0.73 8.14 -51.93 -0.42 0.30 15 19 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 20 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.04 0.67 8.10 -51.93 -0.42 0.25 15 22 H 0.08 1.65 8.14 -51.93 -0.42 1.23 15 23 H 0.33 7.15 8.71 -39.29 -0.34 6.81 15 24 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 15 25 H 0.03 0.89 8.14 -51.93 -0.42 0.46 15 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 27 H 0.17 2.12 8.06 -52.48 -0.42 1.70 15 LS Contribution 255.74 15.07 3.85 3.85 Total: -1.00 -32.07 255.74 -7.43 -39.50 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.27 Total: -0.07 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.40 Total: -8.19 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.10 Total: -50.66 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.07 -7.43 -39.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020253417.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.875 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds