Wall clock time and date at job start Sun Mar 29 2020 21:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29031 * 124.91251 * 2 1 4 4 C 1.31779 * 117.12188 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74976 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47194 * 275.02238 * 5 4 3 7 7 C 1.46902 * 110.99800 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.46577 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00196 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00338 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99426 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47555 * 90.00165 * 12 10 8 14 14 H 1.48503 * 109.46814 * 210.00053 * 12 10 8 15 15 H 1.48496 * 109.47318 * 329.99545 * 12 10 8 16 16 C 1.33639 * 114.50176 * 0.22806 * 4 3 2 17 17 S 1.70979 * 124.91889 * 180.02562 * 2 1 3 18 18 H 1.08994 * 109.47364 * 90.00261 * 1 2 3 19 19 H 1.09004 * 109.46384 * 210.00184 * 1 2 3 20 20 H 1.09001 * 109.46987 * 329.99918 * 1 2 3 21 21 H 1.09002 * 109.47213 * 155.02176 * 5 4 3 22 22 H 1.09001 * 109.47086 * 35.01932 * 5 4 3 23 23 H 1.00898 * 110.99743 * 303.94953 * 6 5 4 24 24 H 1.09000 * 109.46894 * 60.00165 * 7 6 5 25 25 H 1.09000 * 109.47263 * 299.99731 * 7 6 5 26 26 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 27 27 H 1.08005 * 126.04040 * 179.77132 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0012 6 7 4.7562 2.4754 -1.3810 7 6 5.7085 3.5932 -1.4207 8 6 5.9147 4.0269 -2.8492 9 1 5.3904 3.5229 -3.6476 10 6 6.7720 5.0678 -3.1366 11 7 7.4092 5.6826 -2.1642 12 14 7.0270 5.6059 -4.9072 13 1 6.0349 6.6551 -5.2536 14 1 8.3994 6.1505 -5.0662 15 1 6.8497 4.4398 -5.8093 16 6 3.9354 -0.4005 -0.0058 17 16 2.4857 -1.4020 -0.0006 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3632 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 5.4749 1.6954 0.4325 22 1 4.1275 2.8479 0.5886 23 1 5.0691 1.7134 -1.9637 24 1 6.6609 3.2743 -0.9971 25 1 5.3140 4.4274 -0.8407 26 1 8.0120 6.4151 -2.3665 27 1 4.9546 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020253417.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:13 Heat of formation + Delta-G solvation = 13.798361 kcal Electronic energy + Delta-G solvation = -11353.855427 eV Core-core repulsion = 9237.227525 eV Total energy + Delta-G solvation = -2116.627902 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.86918 -37.09208 -34.71513 -33.06690 -29.89858 -28.79885 -26.57138 -23.80891 -23.10040 -20.66352 -19.03442 -18.26910 -16.78657 -16.27308 -16.19364 -15.90329 -14.98967 -14.88111 -14.31316 -14.04144 -13.53898 -13.36400 -13.25928 -12.96902 -12.69217 -12.64331 -12.25247 -11.94575 -11.36646 -10.68501 -10.53884 -10.33595 -9.67646 -9.17310 -8.24528 -6.36165 -0.22768 0.46492 0.74871 1.40128 1.42670 1.53698 1.78697 2.39377 3.08558 3.16355 3.69290 3.98453 4.24002 4.36830 4.52323 4.54518 4.70585 4.83143 5.02184 5.04578 5.20891 5.24944 5.57551 5.97281 6.37460 6.63117 6.83153 6.90600 7.34483 8.87150 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.058920 B = 0.005616 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.110186 B = 4984.575188 C = 5079.675936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.033 3.967 3 N -0.501 5.501 4 C 0.063 3.937 5 C 0.133 3.867 6 N -0.683 5.683 7 C 0.209 3.791 8 C -0.538 4.538 9 H 0.062 0.938 10 C 0.002 3.998 11 N -0.933 5.933 12 Si 0.976 3.024 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.263 1.263 16 C -0.264 4.264 17 S 0.167 5.833 18 H 0.096 0.904 19 H 0.109 0.891 20 H 0.085 0.915 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.335 0.665 24 H -0.031 1.031 25 H 0.000 1.000 26 H 0.266 0.734 27 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.731 -15.729 4.498 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.245 4.245 3 N -0.217 5.217 4 C -0.069 4.069 5 C 0.001 3.999 6 N -0.314 5.314 7 C 0.082 3.918 8 C -0.576 4.576 9 H 0.080 0.920 10 C -0.196 4.196 11 N -0.573 5.573 12 Si 0.800 3.200 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.187 1.187 16 C -0.404 4.404 17 S 0.421 5.579 18 H 0.115 0.885 19 H 0.127 0.873 20 H 0.104 0.896 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.152 0.848 24 H -0.013 1.013 25 H 0.018 0.982 26 H 0.075 0.925 27 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.632 -15.748 4.544 20.099 hybrid contribution 1.946 1.028 -0.394 2.236 sum -9.687 -14.720 4.150 18.103 Atomic orbital electron populations 1.20623 0.82762 1.05322 1.04948 1.27773 1.03468 0.91014 1.02204 1.66066 1.05154 1.33390 1.17109 1.20091 0.90136 0.94261 1.02401 1.20334 0.94397 0.93629 0.91550 1.60496 1.51134 1.11395 1.08396 1.19237 0.87564 0.88602 0.96429 1.21503 1.25454 1.17376 0.93273 0.91974 1.25966 0.95046 0.96092 1.02540 1.70086 1.29422 1.23698 1.34070 0.85292 0.77469 0.78648 0.78631 1.19929 1.20357 1.18740 1.27111 1.05059 0.95588 1.12603 1.83405 0.95756 1.10861 1.67859 0.88539 0.87266 0.89610 0.93292 0.91734 0.84824 1.01295 0.98193 0.92481 0.79077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.46 71.24 0.75 -0.51 15 2 C 0.03 0.85 7.39 88.52 0.65 1.50 15 3 N -0.50 -17.33 10.53 -179.40 -1.89 -19.21 15 4 C 0.06 2.16 6.25 41.52 0.26 2.42 15 5 C 0.13 5.27 6.12 85.56 0.52 5.79 15 6 N -0.68 -32.01 6.48 -521.96 -3.38 -35.40 15 7 C 0.21 11.72 5.44 85.56 0.47 12.19 15 8 C -0.54 -31.80 9.32 25.60 0.24 -31.56 15 9 H 0.06 3.59 7.81 -2.91 -0.02 3.57 15 10 C 0.00 0.11 5.46 84.66 0.46 0.57 15 11 N -0.93 -57.30 13.29 21.45 0.28 -57.02 15 12 Si 0.98 45.16 29.54 68.60 2.03 47.18 15 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 14 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 15 16 C -0.26 -7.11 11.11 66.78 0.74 -6.37 15 17 S 0.17 3.46 23.18 -56.49 -1.31 2.16 15 18 H 0.10 1.40 8.14 -2.39 -0.02 1.38 15 19 H 0.11 1.08 8.14 -2.39 -0.02 1.06 15 20 H 0.09 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.05 1.80 8.10 -2.39 -0.02 1.78 15 22 H 0.06 2.73 8.14 -2.39 -0.02 2.71 15 23 H 0.33 14.78 8.71 -89.70 -0.78 14.00 15 24 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 15 25 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 15 26 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 27 H 0.19 4.28 8.06 -2.91 -0.02 4.26 15 Total: -1.00 -69.87 255.74 0.21 -69.67 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.39 Total: 8.59 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 4.09 Total: -15.96 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.99 Total: -111.63 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.31 Total: 2.16 kcal Total: -69.87 0.21 -69.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020253417.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.463 kcal (2) G-P(sol) polarization free energy of solvation -69.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds