Wall clock time and date at job start Sun Mar 29 2020 21:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48495 * 109.47226 * 270.00475 * 3 2 1 5 5 H 1.48504 * 109.46900 * 30.00269 * 3 2 1 6 6 H 1.48495 * 109.47429 * 150.00055 * 3 2 1 7 7 C 1.40048 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99675 * 0.02562 * 7 2 1 10 10 O 1.21681 * 120.00090 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99830 * 179.97438 * 9 7 2 12 12 C 1.47421 * 125.64852 * 359.96847 * 11 9 7 13 13 C 1.54917 * 104.83002 * 155.91133 * 12 11 9 14 14 C 1.55151 * 101.58025 * 37.01304 * 13 12 11 15 15 C 1.47021 * 125.64696 * 180.02562 * 11 9 7 16 16 H 1.08996 * 109.88310 * 300.43775 * 15 11 9 17 17 C 1.50705 * 109.88447 * 61.60570 * 15 11 9 18 18 N 1.34780 * 119.99763 * 198.54869 * 17 15 11 19 19 O 1.21274 * 120.00178 * 18.54259 * 17 15 11 20 20 H 0.96997 * 120.00707 * 359.97438 * 1 2 3 21 21 H 1.09002 * 110.36865 * 37.07626 * 12 11 9 22 22 H 1.08994 * 110.46657 * 274.79775 * 12 11 9 23 23 H 1.08998 * 111.00193 * 155.08783 * 13 12 11 24 24 H 1.09004 * 111.00194 * 278.93638 * 13 12 11 25 25 H 1.09000 * 110.72429 * 82.86540 * 14 13 12 26 26 H 1.09003 * 110.71831 * 206.13662 * 14 13 12 27 27 H 0.96994 * 120.00313 * 359.97438 * 18 17 15 28 28 H 0.96999 * 119.99717 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4000 5 1 1.4381 2.6527 0.7001 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0583 -2.4805 -0.0026 11 7 1.9490 -3.6477 -0.0027 12 6 3.4161 -3.7927 -0.0035 13 6 3.6765 -5.1926 0.6067 14 6 2.4963 -6.0120 0.0211 15 6 1.3429 -4.9871 -0.0045 16 1 0.7166 -5.1117 0.8789 17 6 0.5180 -5.1748 -1.2517 18 7 -0.4146 -6.1465 -1.3029 19 8 0.6933 -4.4515 -2.2092 20 1 -0.4851 0.8400 0.0004 21 1 3.8742 -3.0191 0.6128 22 1 3.8033 -3.7446 -1.0212 23 1 4.6337 -5.5926 0.2724 24 1 3.6273 -5.1596 1.6952 25 1 2.7285 -6.3566 -0.9866 26 1 2.2509 -6.8527 0.6702 27 1 -0.5546 -6.7252 -0.5372 28 1 -0.9458 -6.2671 -2.1055 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020295036.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:36 Heat of formation + Delta-G solvation = -73.532577 kcal Electronic energy + Delta-G solvation = -14493.094814 eV Core-core repulsion = 11929.927087 eV Total energy + Delta-G solvation = -2563.167727 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.50490 -37.22853 -35.52679 -33.08053 -32.42990 -30.36762 -28.88607 -26.07619 -23.18778 -21.17834 -20.57540 -18.77049 -17.07871 -16.54913 -16.17328 -15.50654 -14.73921 -14.28872 -13.94148 -13.42957 -12.80321 -12.73984 -12.55970 -11.85781 -11.59998 -11.15324 -11.06544 -10.82052 -10.77641 -10.53238 -10.22463 -10.09362 -9.25915 -9.13253 -8.78486 -7.57892 -7.20234 -6.13486 -4.57179 3.18956 3.24659 3.28096 3.33473 3.97173 4.16092 4.60628 4.65752 4.95373 5.15101 5.19626 5.62583 5.70202 5.86053 5.90119 6.00981 6.09697 6.37439 6.48778 6.67326 7.25313 7.34449 7.49886 7.83956 8.15783 8.43904 8.93950 9.08226 9.53182 10.64523 10.83472 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.039393 B = 0.010715 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.613200 B = 2612.508781 C = 3094.301538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.578 3.422 10 O -0.570 6.570 11 N -0.624 5.624 12 C 0.117 3.883 13 C -0.133 4.133 14 C -0.119 4.119 15 C 0.126 3.874 16 H 0.078 0.922 17 C 0.511 3.489 18 N -0.865 5.865 19 O -0.521 6.521 20 H 0.268 0.732 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.394 0.606 28 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.320 -11.235 1.993 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.385 3.615 10 O -0.452 6.452 11 N -0.364 5.364 12 C -0.007 4.007 13 C -0.171 4.171 14 C -0.157 4.157 15 C 0.017 3.983 16 H 0.096 0.904 17 C 0.295 3.705 18 N -0.430 5.430 19 O -0.393 6.393 20 H 0.078 0.922 21 H 0.092 0.908 22 H 0.067 0.933 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.221 0.779 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.684 -10.411 1.470 11.510 hybrid contribution 0.054 0.382 -0.040 0.388 sum 4.738 -10.029 1.429 11.183 Atomic orbital electron populations 1.70023 1.07077 1.27212 1.35393 1.25728 0.94638 1.00294 0.92650 0.86349 0.80085 0.81320 0.78860 1.19719 1.20478 1.18859 1.20848 0.93547 0.88823 1.54036 0.91218 1.18015 0.86701 0.81016 0.75809 1.90597 1.13899 1.85607 1.55091 1.48662 1.04749 1.02945 1.80035 1.21938 0.83719 0.95585 0.99500 1.22810 0.97511 0.96107 1.00698 1.22540 0.94711 0.96808 1.01663 1.21133 0.94831 0.87610 0.94748 0.90382 1.21301 0.80015 0.78887 0.90327 1.43901 1.41552 1.37321 1.20215 1.90718 1.67462 1.43269 1.37901 0.92155 0.90756 0.93261 0.90651 0.90813 0.90950 0.90352 0.77861 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.99 11.83 55.55 0.66 -23.33 15 2 C 0.09 2.51 5.50 -17.37 -0.10 2.42 15 3 Si 0.91 20.89 29.56 -169.99 -5.02 15.86 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.26 -5.80 7.11 56.52 0.40 -5.40 15 7 C -0.54 -15.89 8.98 -35.63 -0.32 -16.21 15 8 H 0.07 1.89 6.64 -52.48 -0.35 1.54 15 9 C 0.58 17.48 7.18 -12.98 -0.09 17.39 15 10 O -0.57 -19.39 14.83 5.21 0.08 -19.32 15 11 N -0.62 -15.08 2.75 -165.97 -0.46 -15.54 15 12 C 0.12 2.23 6.52 -2.53 -0.02 2.22 15 13 C -0.13 -1.83 7.09 -24.58 -0.17 -2.01 15 14 C -0.12 -1.65 6.47 -24.90 -0.16 -1.81 15 15 C 0.13 2.47 3.26 -68.10 -0.22 2.25 15 16 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 17 C 0.51 10.73 6.54 -10.98 -0.07 10.66 15 18 N -0.87 -12.90 8.87 31.22 0.28 -12.62 15 19 O -0.52 -13.85 16.97 5.56 0.09 -13.76 15 20 H 0.27 7.56 8.29 -40.82 -0.34 7.23 15 21 H 0.07 1.41 7.14 -51.93 -0.37 1.04 15 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.07 0.99 7.84 -51.93 -0.41 0.58 15 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.39 4.31 8.83 -40.82 -0.36 3.95 15 28 H 0.39 5.35 8.93 -40.82 -0.36 4.99 15 LS Contribution 246.05 15.07 3.71 3.71 Total: -1.00 -39.90 246.05 -4.92 -44.83 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.10 Total: 5.26 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: -1.15 Total: 14.91 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.48 Total: -51.49 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: 0.17 Total: -33.07 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -39.90 -4.92 -44.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020295036.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.707 kcal (2) G-P(sol) polarization free energy of solvation -39.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds