Wall clock time and date at job start Sun Mar 29 2020 21:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48495 * 109.47226 * 270.00475 * 3 2 1 5 5 H 1.48504 * 109.46900 * 30.00269 * 3 2 1 6 6 H 1.48495 * 109.47429 * 150.00055 * 3 2 1 7 7 C 1.40048 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99675 * 0.02562 * 7 2 1 10 10 O 1.21681 * 120.00090 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99830 * 179.97438 * 9 7 2 12 12 C 1.47421 * 125.64852 * 359.96847 * 11 9 7 13 13 C 1.54917 * 104.83002 * 155.91133 * 12 11 9 14 14 C 1.55151 * 101.58025 * 37.01304 * 13 12 11 15 15 C 1.47021 * 125.64696 * 180.02562 * 11 9 7 16 16 H 1.08996 * 109.88310 * 300.43775 * 15 11 9 17 17 C 1.50705 * 109.88447 * 61.60570 * 15 11 9 18 18 N 1.34780 * 119.99763 * 198.54869 * 17 15 11 19 19 O 1.21274 * 120.00178 * 18.54259 * 17 15 11 20 20 H 0.96997 * 120.00707 * 359.97438 * 1 2 3 21 21 H 1.09002 * 110.36865 * 37.07626 * 12 11 9 22 22 H 1.08994 * 110.46657 * 274.79775 * 12 11 9 23 23 H 1.08998 * 111.00193 * 155.08783 * 13 12 11 24 24 H 1.09004 * 111.00194 * 278.93638 * 13 12 11 25 25 H 1.09000 * 110.72429 * 82.86540 * 14 13 12 26 26 H 1.09003 * 110.71831 * 206.13662 * 14 13 12 27 27 H 0.96994 * 120.00313 * 359.97438 * 18 17 15 28 28 H 0.96999 * 119.99717 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4000 5 1 1.4381 2.6527 0.7001 6 1 3.5382 1.4403 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0583 -2.4805 -0.0026 11 7 1.9490 -3.6477 -0.0027 12 6 3.4161 -3.7927 -0.0035 13 6 3.6765 -5.1926 0.6067 14 6 2.4963 -6.0120 0.0211 15 6 1.3429 -4.9871 -0.0045 16 1 0.7166 -5.1117 0.8789 17 6 0.5180 -5.1748 -1.2517 18 7 -0.4146 -6.1465 -1.3029 19 8 0.6933 -4.4515 -2.2092 20 1 -0.4851 0.8400 0.0004 21 1 3.8742 -3.0191 0.6128 22 1 3.8033 -3.7446 -1.0212 23 1 4.6337 -5.5926 0.2724 24 1 3.6273 -5.1596 1.6952 25 1 2.7285 -6.3566 -0.9866 26 1 2.2509 -6.8527 0.6702 27 1 -0.5546 -6.7252 -0.5372 28 1 -0.9458 -6.2671 -2.1055 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020295036.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:35 Heat of formation + Delta-G solvation = -107.960731 kcal Electronic energy + Delta-G solvation = -14494.587730 eV Core-core repulsion = 11929.927087 eV Total energy + Delta-G solvation = -2564.660643 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.15269 -39.06006 -37.44810 -34.67038 -34.61756 -32.05836 -30.36612 -28.20731 -24.81431 -22.75375 -22.11749 -20.50588 -18.83103 -18.11306 -17.93773 -17.51448 -16.36534 -16.02779 -15.61310 -15.25880 -14.57654 -14.33472 -14.03758 -13.70755 -13.25592 -13.02244 -12.78758 -12.51547 -12.49214 -12.00348 -11.88619 -11.68190 -10.97969 -10.90259 -10.61759 -9.87090 -9.12478 -8.30810 -6.85910 1.36481 1.39619 1.54518 1.71631 2.21862 2.39582 2.65144 2.93486 3.62295 3.70441 3.80969 4.11243 4.28016 4.35521 4.69645 4.87908 4.97495 5.06197 5.10009 5.30752 5.38211 5.62315 5.93406 6.02002 6.31834 6.58683 6.85187 7.42700 7.48900 8.46464 8.66914 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.039393 B = 0.010715 C = 0.009047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.613200 B = 2612.508781 C = 3094.301538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.025 3.975 3 Si 1.000 3.000 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.244 1.244 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.559 3.441 10 O -0.626 6.626 11 N -0.636 5.636 12 C 0.103 3.897 13 C -0.115 4.115 14 C -0.104 4.104 15 C 0.112 3.888 16 H 0.083 0.917 17 C 0.503 3.497 18 N -0.836 5.836 19 O -0.590 6.590 20 H 0.274 0.726 21 H 0.068 0.932 22 H 0.041 0.959 23 H 0.114 0.886 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.127 0.873 27 H 0.417 0.583 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 -12.480 2.923 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.167 1.167 7 C -0.605 4.605 8 H 0.104 0.896 9 C 0.365 3.635 10 O -0.513 6.513 11 N -0.374 5.374 12 C -0.020 4.020 13 C -0.152 4.152 14 C -0.142 4.142 15 C 0.003 3.997 16 H 0.100 0.900 17 C 0.288 3.712 18 N -0.401 5.401 19 O -0.469 6.469 20 H 0.084 0.916 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.132 0.868 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.145 0.855 27 H 0.249 0.751 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 6.715 -11.775 2.438 13.773 hybrid contribution -0.605 0.630 -0.331 0.934 sum 6.111 -11.145 2.107 12.884 Atomic orbital electron populations 1.70202 1.09626 1.28868 1.36703 1.27059 0.95602 1.05110 0.91169 0.84993 0.78971 0.74824 0.79309 1.19056 1.19329 1.16669 1.21412 0.94583 0.89861 1.54620 0.89617 1.18332 0.86382 0.83222 0.75525 1.90524 1.16070 1.87214 1.57457 1.48408 1.07109 1.03447 1.78394 1.22242 0.80740 0.99383 0.99650 1.22798 0.99221 0.91951 1.01271 1.22627 0.91968 0.96353 1.03220 1.21579 0.97053 0.87028 0.94014 0.89963 1.21666 0.80719 0.78933 0.89932 1.43588 1.39395 1.35678 1.21440 1.90685 1.69840 1.46187 1.40215 0.91649 0.91314 0.94061 0.86756 0.89324 0.90541 0.85477 0.75150 0.76724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -53.47 11.83 21.83 0.26 -53.21 15 2 C 0.02 1.48 5.50 85.31 0.47 1.95 15 3 Si 1.00 43.32 29.56 68.60 2.03 45.35 15 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 6 H -0.24 -9.62 7.11 99.48 0.71 -8.92 15 7 C -0.57 -34.66 8.98 24.83 0.22 -34.43 15 8 H 0.09 4.72 6.64 -2.91 -0.02 4.70 15 9 C 0.56 35.12 7.18 86.36 0.62 35.74 15 10 O -0.63 -44.71 14.83 -4.29 -0.06 -44.77 15 11 N -0.64 -31.14 2.75 -797.22 -2.20 -33.33 15 12 C 0.10 3.84 6.52 86.86 0.57 4.41 15 13 C -0.11 -2.70 7.09 31.99 0.23 -2.47 15 14 C -0.10 -2.47 6.47 31.78 0.21 -2.27 15 15 C 0.11 4.28 3.26 44.60 0.15 4.42 15 16 H 0.08 3.04 8.14 -2.39 -0.02 3.02 15 17 C 0.50 21.16 6.54 87.66 0.57 21.73 15 18 N -0.84 -23.87 8.87 -173.53 -1.54 -25.41 15 19 O -0.59 -32.56 16.97 -3.01 -0.05 -32.61 15 20 H 0.27 16.02 8.29 -92.71 -0.77 15.26 15 21 H 0.07 2.58 7.14 -2.39 -0.02 2.56 15 22 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.11 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.09 1.88 8.14 -2.38 -0.02 1.86 15 25 H 0.08 1.81 7.84 -2.39 -0.02 1.79 15 26 H 0.13 1.87 8.14 -2.39 -0.02 1.85 15 27 H 0.42 8.07 8.83 -92.71 -0.82 7.25 15 28 H 0.40 10.55 8.93 -92.71 -0.83 9.72 15 Total: -1.00 -94.16 246.05 1.02 -93.14 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -0.45 Total: 21.77 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 3.03 Total: 29.08 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -3.48 Total: -111.96 kcal Atomic # 8 Polarization: -77.26 SS G_CDS: -0.11 Total: -77.38 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -94.16 1.02 -93.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020295036.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.819 kcal (2) G-P(sol) polarization free energy of solvation -94.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds