Wall clock time and date at job start Sun Mar 29 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47176 * 2 1 4 4 H 1.08999 * 109.47455 * 323.04653 * 3 2 1 5 5 C 1.50704 * 109.47096 * 203.04832 * 3 2 1 6 6 H 1.07998 * 119.99976 * 242.30729 * 5 3 2 7 7 C 1.37882 * 119.99639 * 62.30647 * 5 3 2 8 8 N 1.31513 * 119.99732 * 191.08280 * 7 5 3 9 9 Si 1.86801 * 120.00053 * 11.08895 * 7 5 3 10 10 H 1.48502 * 109.46939 * 90.68639 * 9 7 5 11 11 H 1.48499 * 109.46764 * 210.68462 * 9 7 5 12 12 H 1.48500 * 109.47160 * 330.68566 * 9 7 5 13 13 N 1.46898 * 109.47343 * 83.05183 * 3 2 1 14 14 C 1.46848 * 111.00373 * 68.78067 * 13 3 2 15 15 C 1.53033 * 109.52713 * 174.16063 * 14 13 3 16 16 C 1.53123 * 109.27669 * 59.17919 * 15 14 13 17 17 C 1.53116 * 109.16424 * 302.34833 * 16 15 14 18 18 H 1.09004 * 109.50278 * 297.71463 * 17 16 15 19 19 C 1.52990 * 109.50754 * 177.63438 * 17 16 15 20 20 C 1.46848 * 110.99931 * 304.57334 * 13 3 2 21 21 H 1.09000 * 109.47333 * 173.09224 * 1 2 3 22 22 H 1.08999 * 109.47170 * 293.09063 * 1 2 3 23 23 H 1.09000 * 109.46946 * 53.08995 * 1 2 3 24 24 H 1.09007 * 109.47174 * 120.00008 * 2 1 3 25 25 H 1.08999 * 109.47029 * 239.99560 * 2 1 3 26 26 H 0.96999 * 120.00254 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.46476 * 294.18225 * 14 13 3 28 28 H 1.09003 * 109.45833 * 54.15567 * 14 13 3 29 29 H 1.09000 * 109.50487 * 179.12120 * 15 14 13 30 30 H 1.09000 * 109.50238 * 299.20472 * 15 14 13 31 31 H 1.08999 * 109.52069 * 62.25348 * 16 15 14 32 32 H 1.08998 * 109.52236 * 182.44060 * 16 15 14 33 33 H 1.08997 * 109.47519 * 59.99776 * 19 17 16 34 34 H 1.08996 * 109.47890 * 180.02562 * 19 17 16 35 35 H 1.08999 * 109.46960 * 300.00025 * 19 17 16 36 36 H 1.09004 * 109.45977 * 305.85491 * 20 13 3 37 37 H 1.09004 * 109.46184 * 65.82282 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3869 2.0588 -0.6178 5 6 3.4401 1.4802 -0.5563 6 1 4.2584 1.8165 0.0632 7 6 3.6763 1.0855 -1.8561 8 7 4.9101 0.9089 -2.2757 9 14 2.2439 0.8016 -3.0210 10 1 1.9321 2.0637 -3.7389 11 1 2.6065 -0.2505 -4.0042 12 1 1.0543 0.3662 -2.2460 13 7 2.0453 1.9600 1.3748 14 6 3.0684 1.2882 2.1862 15 6 3.1444 1.9499 3.5640 16 6 1.7780 1.8515 4.2480 17 6 0.7223 2.5160 3.3601 18 1 0.9592 3.5734 3.2423 19 6 -0.6557 2.3704 4.0085 20 6 0.7166 1.8379 1.9882 21 1 -0.3634 -1.0202 -0.1236 22 1 -0.3633 0.4030 0.9453 23 1 -0.3633 0.6172 -0.8217 24 1 1.8934 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 5.0764 0.6308 -3.1900 27 1 2.8070 0.2365 2.3023 28 1 4.0359 1.3693 1.6906 29 1 3.8929 1.4410 4.1713 30 1 3.4200 2.9982 3.4495 31 1 1.5203 0.8030 4.3979 32 1 1.8157 2.3596 5.2116 33 1 -0.6496 2.8509 4.9868 34 1 -1.4069 2.8431 3.3759 35 1 -0.8926 1.3128 4.1247 36 1 -0.0241 2.3181 1.3487 37 1 0.4662 0.7835 2.1052 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034434708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:36 Heat of formation + Delta-G solvation = -0.328617 kcal Electronic energy + Delta-G solvation = -15260.465134 eV Core-core repulsion = 13037.563870 eV Total energy + Delta-G solvation = -2222.901265 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.02945 -35.29473 -32.19367 -32.07654 -30.26077 -27.82600 -25.90409 -23.61992 -22.01965 -21.69208 -19.69353 -18.97178 -16.58935 -15.53228 -14.67651 -14.40215 -14.09845 -13.80029 -13.50331 -12.89186 -12.72494 -12.43980 -12.12135 -11.79017 -11.51857 -11.42031 -11.33611 -11.01235 -10.77076 -10.43122 -10.39370 -10.13815 -9.99069 -9.82491 -9.51446 -9.31150 -8.92752 -8.39912 -7.15535 -6.05101 -4.01200 3.31404 3.40872 3.44405 4.45693 4.81975 5.08814 5.22118 5.26678 5.35009 5.58356 5.78544 5.82405 5.86172 5.94580 5.97705 6.01278 6.10322 6.11686 6.18594 6.29009 6.33004 6.41705 6.50238 6.57752 6.67193 6.71948 6.80425 6.87794 6.93299 7.09220 7.40195 7.65187 8.06063 8.24063 8.71024 9.02909 9.59114 11.06950 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040000 B = 0.010734 C = 0.009124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.823785 B = 2607.970182 C = 3068.029426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.154 4.154 3 C 0.190 3.810 4 H 0.035 0.965 5 C -0.511 4.511 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.241 1.241 13 N -0.522 5.522 14 C 0.059 3.941 15 C -0.119 4.119 16 C -0.112 4.112 17 C -0.093 4.093 18 H 0.074 0.926 19 C -0.144 4.144 20 C 0.052 3.948 21 H 0.035 0.965 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.263 0.737 27 H 0.021 0.979 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 0.288 10.010 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.194 4.194 3 C 0.082 3.918 4 H 0.053 0.947 5 C -0.548 4.548 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.683 3.317 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.165 1.165 13 N -0.246 5.246 14 C -0.069 4.069 15 C -0.156 4.156 16 C -0.149 4.149 17 C -0.112 4.112 18 H 0.092 0.908 19 C -0.202 4.202 20 C -0.076 4.076 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.724 0.735 9.825 13.160 hybrid contribution -0.864 -1.104 -0.854 1.641 sum -9.587 -0.369 8.971 13.135 Atomic orbital electron populations 1.22442 0.98315 1.00156 1.01806 1.22618 0.93381 1.02035 1.01345 1.19689 0.97671 0.88777 0.85617 0.94687 1.21042 0.92042 1.43898 0.97868 0.89982 1.24899 0.95299 0.94616 0.98075 1.69932 1.19360 1.46884 1.17381 0.87399 0.85052 0.78054 0.81240 1.20813 1.21740 1.16480 1.62053 1.02723 1.56862 1.02924 1.22053 0.98280 0.94376 0.92182 1.21642 0.95968 1.01616 0.96423 1.21608 0.95634 0.99938 0.97749 1.21220 0.94129 1.00737 0.95115 0.90798 1.21790 0.97017 1.01285 1.00090 1.22447 0.92924 0.98083 0.94163 0.94600 0.91755 0.93274 0.93203 0.91974 0.92768 0.96038 0.88869 0.92548 0.91602 0.92841 0.92845 0.93049 0.92893 0.93134 0.91807 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.70 37.16 0.32 -2.79 16 2 C -0.15 -3.34 3.99 -26.73 -0.11 -3.45 16 3 C 0.19 4.45 1.69 -68.87 -0.12 4.34 16 4 H 0.04 0.86 6.81 -51.93 -0.35 0.50 16 5 C -0.51 -14.10 8.42 -34.44 -0.29 -14.39 16 6 H 0.08 2.46 6.22 -52.49 -0.33 2.13 16 7 C 0.07 2.08 5.25 -17.82 -0.09 1.98 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 9 Si 0.86 20.95 25.67 -169.99 -4.36 16.58 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.24 -5.44 4.00 56.52 0.23 -5.22 16 13 N -0.52 -10.84 4.71 -228.08 -1.07 -11.92 16 14 C 0.06 1.16 4.85 -3.84 -0.02 1.14 16 15 C -0.12 -1.89 6.09 -26.65 -0.16 -2.06 16 16 C -0.11 -1.57 5.29 -26.61 -0.14 -1.71 16 17 C -0.09 -1.35 2.88 -90.54 -0.26 -1.61 16 18 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 19 C -0.14 -1.70 9.20 37.15 0.34 -1.36 16 20 C 0.05 0.90 2.97 -3.83 -0.01 0.89 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 1.07 4.27 -51.93 -0.22 0.85 16 23 H 0.05 0.91 7.07 -51.93 -0.37 0.54 16 24 H 0.05 1.06 6.04 -51.93 -0.31 0.75 16 25 H 0.06 1.45 4.88 -51.93 -0.25 1.20 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.43 6.48 -51.93 -0.34 0.09 16 28 H 0.09 2.10 5.72 -51.93 -0.30 1.80 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 1.10 7.70 -51.93 -0.40 0.70 16 37 H 0.04 0.66 5.31 -51.93 -0.28 0.39 16 LS Contribution 263.98 15.07 3.98 3.98 Total: -1.00 -28.91 263.98 -7.48 -36.39 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.26 Total: 0.47 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -0.53 Total: -19.02 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.30 Total: -38.40 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.36 Total: 16.58 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.91 -7.48 -36.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034434708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.062 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds