Wall clock time and date at job start Sun Mar 29 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47176 * 2 1 4 4 H 1.08999 * 109.47455 * 323.04653 * 3 2 1 5 5 C 1.50704 * 109.47096 * 203.04832 * 3 2 1 6 6 H 1.07998 * 119.99976 * 242.30729 * 5 3 2 7 7 C 1.37882 * 119.99639 * 62.30647 * 5 3 2 8 8 N 1.31513 * 119.99732 * 191.08280 * 7 5 3 9 9 Si 1.86801 * 120.00053 * 11.08895 * 7 5 3 10 10 H 1.48502 * 109.46939 * 90.68639 * 9 7 5 11 11 H 1.48499 * 109.46764 * 210.68462 * 9 7 5 12 12 H 1.48500 * 109.47160 * 330.68566 * 9 7 5 13 13 N 1.46898 * 109.47343 * 83.05183 * 3 2 1 14 14 C 1.46848 * 111.00373 * 68.78067 * 13 3 2 15 15 C 1.53033 * 109.52713 * 174.16063 * 14 13 3 16 16 C 1.53123 * 109.27669 * 59.17919 * 15 14 13 17 17 C 1.53116 * 109.16424 * 302.34833 * 16 15 14 18 18 H 1.09004 * 109.50278 * 297.71463 * 17 16 15 19 19 C 1.52990 * 109.50754 * 177.63438 * 17 16 15 20 20 C 1.46848 * 110.99931 * 304.57334 * 13 3 2 21 21 H 1.09000 * 109.47333 * 173.09224 * 1 2 3 22 22 H 1.08999 * 109.47170 * 293.09063 * 1 2 3 23 23 H 1.09000 * 109.46946 * 53.08995 * 1 2 3 24 24 H 1.09007 * 109.47174 * 120.00008 * 2 1 3 25 25 H 1.08999 * 109.47029 * 239.99560 * 2 1 3 26 26 H 0.96999 * 120.00254 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.46476 * 294.18225 * 14 13 3 28 28 H 1.09003 * 109.45833 * 54.15567 * 14 13 3 29 29 H 1.09000 * 109.50487 * 179.12120 * 15 14 13 30 30 H 1.09000 * 109.50238 * 299.20472 * 15 14 13 31 31 H 1.08999 * 109.52069 * 62.25348 * 16 15 14 32 32 H 1.08998 * 109.52236 * 182.44060 * 16 15 14 33 33 H 1.08997 * 109.47519 * 59.99776 * 19 17 16 34 34 H 1.08996 * 109.47890 * 180.02562 * 19 17 16 35 35 H 1.08999 * 109.46960 * 300.00025 * 19 17 16 36 36 H 1.09004 * 109.45977 * 305.85491 * 20 13 3 37 37 H 1.09004 * 109.46184 * 65.82282 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3869 2.0588 -0.6178 5 6 3.4401 1.4802 -0.5563 6 1 4.2584 1.8165 0.0632 7 6 3.6763 1.0855 -1.8561 8 7 4.9101 0.9089 -2.2757 9 14 2.2439 0.8016 -3.0210 10 1 1.9321 2.0637 -3.7389 11 1 2.6065 -0.2505 -4.0042 12 1 1.0543 0.3662 -2.2460 13 7 2.0453 1.9600 1.3748 14 6 3.0684 1.2882 2.1862 15 6 3.1444 1.9499 3.5640 16 6 1.7780 1.8515 4.2480 17 6 0.7223 2.5160 3.3601 18 1 0.9592 3.5734 3.2423 19 6 -0.6557 2.3704 4.0085 20 6 0.7166 1.8379 1.9882 21 1 -0.3634 -1.0202 -0.1236 22 1 -0.3633 0.4030 0.9453 23 1 -0.3633 0.6172 -0.8217 24 1 1.8934 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 5.0764 0.6308 -3.1900 27 1 2.8070 0.2365 2.3023 28 1 4.0359 1.3693 1.6906 29 1 3.8929 1.4410 4.1713 30 1 3.4200 2.9982 3.4495 31 1 1.5203 0.8030 4.3979 32 1 1.8157 2.3596 5.2116 33 1 -0.6496 2.8509 4.9868 34 1 -1.4069 2.8431 3.3759 35 1 -0.8926 1.3128 4.1247 36 1 -0.0241 2.3181 1.3487 37 1 0.4662 0.7835 2.1052 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034434708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:36 Heat of formation + Delta-G solvation = -19.523099 kcal Electronic energy + Delta-G solvation = -15261.297469 eV Core-core repulsion = 13037.563870 eV Total energy + Delta-G solvation = -2223.733600 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.53530 -36.80885 -34.25111 -33.47157 -31.71960 -29.60986 -27.15451 -25.38442 -23.58263 -23.06661 -21.28345 -20.44517 -18.60824 -17.26373 -16.18873 -16.08931 -15.53100 -15.27317 -14.85721 -14.62662 -14.33184 -13.93217 -13.37734 -13.36383 -13.03881 -12.84438 -12.75188 -12.55553 -12.35940 -12.14003 -11.97924 -11.53783 -11.40548 -11.29559 -11.28071 -10.89961 -10.78022 -10.52721 -8.78785 -8.26162 -6.26743 1.35191 1.39287 1.49116 2.37885 3.07351 3.32532 3.92132 4.06949 4.10182 4.27860 4.34119 4.38266 4.49868 4.55189 4.69900 4.79252 4.81766 4.89034 4.93559 4.96600 5.02587 5.13050 5.15999 5.20934 5.23546 5.31180 5.34781 5.40872 5.47056 5.59690 5.64994 5.70051 6.11490 6.50287 6.79731 6.83773 7.37913 8.89072 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040000 B = 0.010734 C = 0.009124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.823785 B = 2607.970182 C = 3068.029426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C 0.193 3.807 4 H 0.031 0.969 5 C -0.512 4.512 6 H 0.041 0.959 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.920 3.080 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.209 1.209 13 N -0.538 5.538 14 C 0.064 3.936 15 C -0.113 4.113 16 C -0.106 4.106 17 C -0.091 4.091 18 H 0.065 0.935 19 C -0.137 4.137 20 C 0.051 3.949 21 H 0.056 0.944 22 H 0.083 0.917 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.049 0.030 11.486 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.190 4.190 3 C 0.085 3.915 4 H 0.048 0.952 5 C -0.550 4.550 6 H 0.059 0.941 7 C -0.183 4.183 8 N -0.589 5.589 9 Si 0.744 3.256 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.131 1.131 13 N -0.261 5.261 14 C -0.065 4.065 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.110 4.110 18 H 0.083 0.917 19 C -0.195 4.195 20 C -0.076 4.076 21 H 0.075 0.925 22 H 0.102 0.898 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.833 0.482 11.333 16.392 hybrid contribution 0.210 -0.979 -1.238 1.592 sum -11.624 -0.497 10.096 15.404 Atomic orbital electron populations 1.22376 0.95044 1.01729 1.02962 1.22461 0.96209 0.99997 1.00355 1.19510 0.94602 0.90176 0.87210 0.95152 1.21334 0.93484 1.42553 0.97601 0.94127 1.25767 0.97971 0.94652 0.99945 1.70087 1.21934 1.49005 1.17857 0.86372 0.82674 0.77728 0.78804 1.20822 1.22005 1.13108 1.61993 1.05029 1.57001 1.02111 1.21941 0.96016 0.94683 0.93812 1.21597 0.98321 1.00768 0.94405 1.21594 0.93643 1.00700 0.98446 1.21216 0.96240 0.99821 0.93709 0.91660 1.21730 0.94928 1.02059 1.00774 1.22561 0.90605 0.98842 0.95634 0.92535 0.89839 0.93248 0.93383 0.93936 0.92825 0.96370 0.93186 0.90969 0.92396 0.92189 0.90250 0.91303 0.92308 0.92479 0.91505 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 8.70 71.98 0.63 -4.79 16 2 C -0.15 -6.30 3.99 30.59 0.12 -6.18 16 3 C 0.19 9.04 1.69 44.17 0.07 9.11 16 4 H 0.03 1.46 6.81 -2.39 -0.02 1.44 16 5 C -0.51 -29.40 8.42 25.60 0.22 -29.19 16 6 H 0.04 2.61 6.22 -2.91 -0.02 2.60 16 7 C 0.01 0.80 5.25 84.66 0.44 1.24 16 8 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 9 Si 0.92 43.72 25.67 68.60 1.76 45.48 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 12 H -0.21 -8.75 4.00 99.48 0.40 -8.35 16 13 N -0.54 -22.16 4.71 -875.51 -4.12 -26.28 16 14 C 0.06 2.54 4.85 86.32 0.42 2.96 16 15 C -0.11 -3.49 6.09 30.65 0.19 -3.30 16 16 C -0.11 -2.65 5.29 30.67 0.16 -2.48 16 17 C -0.09 -2.36 2.88 -10.74 -0.03 -2.39 16 18 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 19 C -0.14 -2.64 9.20 71.98 0.66 -1.98 16 20 C 0.05 1.63 2.97 86.33 0.26 1.89 16 21 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.08 2.43 4.27 -2.39 -0.01 2.42 16 23 H 0.05 1.63 7.07 -2.39 -0.02 1.62 16 24 H 0.05 2.00 6.04 -2.38 -0.01 1.98 16 25 H 0.04 1.93 4.88 -2.39 -0.01 1.91 16 26 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 27 H 0.02 0.73 6.48 -2.39 -0.02 0.71 16 28 H 0.05 2.41 5.72 -2.39 -0.01 2.39 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 2.10 7.70 -2.38 -0.02 2.08 16 37 H 0.04 1.36 5.31 -2.38 -0.01 1.35 16 Total: -1.00 -64.92 263.98 1.79 -63.13 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.72 Total: 12.59 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 3.14 Total: -35.11 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -3.82 Total: -86.09 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.76 Total: 45.48 kcal Total: -64.92 1.79 -63.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034434708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.606 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds