Wall clock time and date at job start Sun Mar 29 2020 21:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.50701 * 109.46921 * 66.04817 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 13 13 C 1.54243 * 108.89865 * 61.83557 * 12 2 1 14 14 C 1.50466 * 108.52840 * 159.26425 * 13 12 2 15 15 C 1.54067 * 112.50200 * 94.15102 * 14 13 12 16 16 C 1.54064 * 112.81282 * 318.28649 * 15 14 13 17 17 C 1.50472 * 112.49847 * 318.28249 * 16 15 14 18 18 C 1.45540 * 108.89634 * 298.95344 * 12 2 1 19 19 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 20 20 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 22 22 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 23 23 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.09001 * 108.87467 * 180.34931 * 12 2 1 26 26 H 1.08997 * 109.62614 * 278.97781 * 13 12 2 27 27 H 1.09008 * 109.62554 * 39.55356 * 13 12 2 28 28 H 1.09004 * 108.87589 * 333.37101 * 14 13 12 29 29 H 1.08995 * 108.80233 * 214.87880 * 14 13 12 30 30 H 1.08995 * 108.81646 * 197.42611 * 15 14 13 31 31 H 1.08995 * 108.72871 * 79.08150 * 15 14 13 32 32 H 1.09001 * 108.87723 * 197.50497 * 16 15 14 33 33 H 1.08997 * 108.87956 * 79.06213 * 16 15 14 34 34 H 1.09002 * 109.62908 * 334.44361 * 17 16 15 35 35 H 1.09004 * 109.62862 * 213.86769 * 17 16 15 36 36 H 1.09000 * 108.89681 * 303.44371 * 18 12 2 37 37 H 1.08998 * 108.89495 * 62.02713 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0747 1.5112 2.0488 6 6 2.0277 3.3491 1.5290 7 7 2.7128 4.0015 0.6155 8 14 1.5839 4.1863 3.1388 9 1 0.8167 3.2436 3.9920 10 1 2.8260 4.5928 3.8441 11 1 0.7569 5.3878 2.8603 12 6 1.9954 -0.7659 -1.1377 13 6 1.5314 -0.0970 -2.4478 14 6 2.4460 -0.5362 -3.5589 15 6 1.9002 -1.7567 -4.3243 16 6 1.2855 -2.8195 -3.3936 17 6 2.1048 -3.0397 -2.1508 18 6 1.5420 -2.1445 -1.0280 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.5611 1.9274 -0.8309 23 1 3.0797 1.3444 -0.1083 24 1 2.9874 4.9176 0.7775 25 1 3.0847 -0.7486 -1.1007 26 1 0.5094 -0.4022 -2.6726 27 1 1.5780 0.9869 -2.3419 28 1 3.4178 -0.7909 -3.1358 29 1 2.5721 0.2908 -4.2577 30 1 2.7149 -2.2117 -4.8875 31 1 1.1361 -1.4180 -5.0240 32 1 1.2082 -3.7615 -3.9365 33 1 0.2849 -2.4985 -3.1041 34 1 3.1438 -2.7735 -2.3453 35 1 2.0418 -4.0859 -1.8514 36 1 1.8591 -2.5449 -0.0650 37 1 0.4532 -2.1629 -1.0761 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035175668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:10 Heat of formation + Delta-G solvation = -14.296647 kcal Electronic energy + Delta-G solvation = -14869.917824 eV Core-core repulsion = 12646.410860 eV Total energy + Delta-G solvation = -2223.506964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28917 -35.58737 -32.64186 -31.88882 -30.24571 -27.12568 -25.30146 -24.57083 -23.33372 -21.04266 -19.29066 -18.84150 -16.44731 -15.48915 -15.03455 -14.50583 -14.41787 -13.87869 -13.43044 -13.10095 -12.72793 -12.62968 -12.04300 -11.88057 -11.68970 -11.29985 -10.94607 -10.80273 -10.60224 -10.47065 -10.34566 -10.25936 -10.06800 -10.05445 -9.89778 -9.56869 -9.11064 -8.38833 -7.07229 -5.98637 -3.99288 3.33073 3.40310 3.45511 4.45530 4.80452 4.91096 5.05730 5.24333 5.36934 5.42957 5.46092 5.53878 5.67389 5.73528 5.91494 5.97813 6.08584 6.18286 6.27059 6.34067 6.35838 6.40188 6.44440 6.46309 6.58551 6.66143 6.77998 6.85309 6.89776 7.39171 7.47784 7.86584 8.17059 8.29964 8.64132 9.09201 9.64639 11.12194 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056528 B = 0.007301 C = 0.006828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.208785 B = 3833.942678 C = 4099.810399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.538 5.538 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.086 3.914 13 C -0.151 4.151 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.110 4.110 19 H 0.013 0.987 20 H 0.046 0.954 21 H 0.069 0.931 22 H -0.005 1.005 23 H 0.027 0.973 24 H 0.260 0.740 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 -11.255 -7.522 13.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.261 5.261 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.023 4.023 13 C -0.190 4.190 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.148 4.148 19 H 0.031 0.969 20 H 0.065 0.935 21 H 0.087 0.913 22 H 0.013 0.987 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.071 -11.302 -7.097 13.505 hybrid contribution -0.432 1.079 0.019 1.162 sum -2.503 -10.223 -7.078 12.684 Atomic orbital electron populations 1.22239 0.89500 0.99105 1.00610 1.62461 1.06738 1.17887 1.39029 1.19738 0.95223 0.81987 0.96380 1.21250 1.34464 0.96875 1.01800 0.91925 1.24991 0.95396 0.97396 0.96935 1.69972 1.38616 1.11338 1.34014 0.86467 0.78123 0.79299 0.83680 1.19698 1.21050 1.21169 1.20587 0.99559 0.93266 0.88866 1.22041 0.99150 1.01884 0.95960 1.21256 0.99536 0.96714 0.97623 1.21901 0.99778 0.95750 0.97736 1.21331 0.99777 0.97919 0.96371 1.21292 1.00044 0.98928 0.95054 1.20581 1.00620 0.95094 0.98491 0.96874 0.93548 0.91252 0.98698 0.95496 0.93075 0.91331 0.92396 0.90828 0.92221 0.92861 0.92805 0.92842 0.93006 0.92257 0.91752 0.92356 0.91649 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 8.64 60.07 0.52 1.20 16 2 N -0.54 -11.84 4.70 -239.82 -1.13 -12.97 16 3 C 0.19 5.07 4.15 -4.97 -0.02 5.05 16 4 C -0.51 -14.46 8.51 -34.44 -0.29 -14.75 16 5 H 0.06 1.78 7.10 -52.49 -0.37 1.41 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.09 1.57 1.74 -70.58 -0.12 1.44 16 13 C -0.15 -2.59 3.89 -27.35 -0.11 -2.69 16 14 C -0.11 -1.63 5.31 -27.44 -0.15 -1.78 16 15 C -0.11 -1.37 5.85 -25.62 -0.15 -1.52 16 16 C -0.12 -1.36 5.31 -27.44 -0.15 -1.51 16 17 C -0.11 -1.43 5.61 -27.35 -0.15 -1.59 16 18 C -0.11 -1.67 4.28 -29.60 -0.13 -1.80 16 19 H 0.01 0.26 7.01 -51.93 -0.36 -0.11 16 20 H 0.05 0.80 6.12 -51.93 -0.32 0.48 16 21 H 0.07 1.48 6.86 -51.93 -0.36 1.13 16 22 H 0.00 -0.13 6.43 -51.93 -0.33 -0.46 16 23 H 0.03 0.77 8.00 -51.93 -0.42 0.35 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.07 1.32 7.36 -51.93 -0.38 0.93 16 26 H 0.06 0.95 6.53 -51.93 -0.34 0.61 16 27 H 0.07 1.49 5.86 -51.92 -0.30 1.18 16 28 H 0.06 0.87 6.63 -51.93 -0.34 0.52 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.73 6.63 -51.93 -0.34 0.39 16 34 H 0.06 0.82 6.98 -51.93 -0.36 0.45 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.88 5.53 -51.93 -0.29 0.60 16 LS Contribution 271.82 15.07 4.10 4.10 Total: -1.00 -29.45 271.82 -8.35 -37.81 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.20 Total: -3.02 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.84 Total: -16.49 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.39 Total: -39.31 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.45 -8.35 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035175668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.511 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds