Wall clock time and date at job start Sun Mar 29 2020 21:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47086 * 2 1 4 4 C 1.46905 * 110.99991 * 171.92507 * 3 2 1 5 5 C 1.52994 * 109.46957 * 296.19821 * 4 3 2 6 6 C 1.50703 * 109.47328 * 185.79672 * 5 4 3 7 7 H 1.08000 * 119.99885 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00205 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99812 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47487 * 89.99752 * 10 8 6 12 12 H 1.48503 * 109.47136 * 209.99766 * 10 8 6 13 13 H 1.48504 * 109.47071 * 329.99443 * 10 8 6 14 14 C 1.46899 * 110.99975 * 295.87547 * 3 2 1 15 15 C 1.54893 * 110.48556 * 325.35310 * 14 3 2 16 16 C 1.55236 * 102.58752 * 156.67410 * 15 14 3 17 17 C 1.54268 * 104.23241 * 322.08496 * 16 15 14 18 18 C 1.53874 * 106.59771 * 23.61247 * 17 16 15 19 19 H 1.09002 * 109.47554 * 308.54245 * 1 2 3 20 20 H 1.09001 * 109.46736 * 68.53475 * 1 2 3 21 21 H 1.09003 * 109.47089 * 188.53416 * 1 2 3 22 22 H 1.08996 * 109.47307 * 239.99699 * 2 1 3 23 23 H 1.09001 * 109.46761 * 119.99427 * 2 1 3 24 24 H 1.08993 * 109.46955 * 56.19830 * 4 3 2 25 25 H 1.09004 * 109.46905 * 176.19662 * 4 3 2 26 26 H 1.09005 * 109.47396 * 305.79368 * 5 4 3 27 27 H 1.08997 * 109.47264 * 65.79302 * 5 4 3 28 28 H 0.96997 * 120.00373 * 180.02562 * 9 8 6 29 29 H 1.09003 * 110.44004 * 202.81393 * 14 3 2 30 30 H 1.08997 * 110.75461 * 275.06473 * 15 14 3 31 31 H 1.08997 * 110.75583 * 38.44052 * 15 14 3 32 32 H 1.09007 * 110.46926 * 203.39327 * 16 15 14 33 33 H 1.09006 * 110.58395 * 80.83050 * 16 15 14 34 34 H 1.09002 * 110.03109 * 264.32667 * 17 16 15 35 35 H 1.09000 * 110.07400 * 142.91853 * 17 16 15 36 36 H 1.09008 * 110.02953 * 240.71676 * 18 17 16 37 37 H 1.08994 * 110.03247 * 119.28892 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4753 1.4287 0.1926 5 6 3.8241 0.8687 1.5730 6 6 5.2990 1.0439 1.8283 7 1 5.9250 1.5079 1.0805 8 6 5.8493 0.6108 3.0160 9 7 5.0871 0.0454 3.9264 10 14 7.6776 0.8274 3.3320 11 1 7.9148 2.1386 3.9874 12 1 8.1594 -0.2630 4.2175 13 1 8.4120 0.7786 2.0422 14 6 1.6308 2.0808 -1.2339 15 6 1.6396 1.1018 -2.4342 16 6 0.6704 1.7855 -3.4356 17 6 -0.4430 2.3737 -2.5445 18 6 0.1677 2.5615 -1.1446 19 1 -0.3634 0.6403 0.8038 20 1 -0.3633 0.3761 -0.9564 21 1 -0.3633 -1.0163 0.1525 22 1 1.8933 -0.5139 -0.8899 23 1 1.8932 -0.5138 0.8901 24 1 3.9617 0.8288 -0.5764 25 1 3.8204 2.4602 0.1212 26 1 3.2575 1.4029 2.3357 27 1 3.5724 -0.1912 1.6093 28 1 5.4741 -0.2589 4.7621 29 1 2.2978 2.9220 -1.4230 30 1 2.6407 1.0183 -2.8572 31 1 1.2617 0.1235 -2.1374 32 1 0.2574 1.0517 -4.1278 33 1 1.1808 2.5788 -3.9820 34 1 -1.2852 1.6836 -2.4949 35 1 -0.7708 3.3347 -2.9407 36 1 -0.3783 1.9624 -0.4157 37 1 0.1369 3.6137 -0.8619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035766157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:58 Heat of formation + Delta-G solvation = -4.407612 kcal Electronic energy + Delta-G solvation = -14635.436724 eV Core-core repulsion = 12412.358581 eV Total energy + Delta-G solvation = -2223.078143 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35771 -35.27429 -32.96285 -30.91416 -29.19176 -28.61652 -26.52064 -23.85331 -22.34395 -20.65559 -19.73632 -19.10159 -16.62895 -15.82414 -15.37279 -14.43116 -14.38558 -13.98618 -13.73405 -13.03648 -12.63816 -12.29427 -12.01012 -11.67315 -11.51397 -11.12009 -11.06664 -10.93236 -10.89298 -10.75336 -10.55469 -10.44830 -10.25536 -9.83136 -9.72634 -9.26473 -9.06285 -8.30076 -7.55699 -5.96733 -3.98827 3.33978 3.39930 3.43144 4.38407 4.54138 4.80283 4.87628 5.08757 5.38980 5.48638 5.53426 5.60299 5.68284 5.72612 5.75155 5.81663 5.89435 5.95601 6.04827 6.17941 6.22026 6.29510 6.34680 6.44792 6.48125 6.57617 6.62016 6.72157 7.02861 7.62125 7.67326 7.87969 7.95734 8.13922 8.47522 9.08512 9.64582 11.14734 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056075 B = 0.006497 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.207736 B = 4308.777894 C = 4546.351776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.042 3.958 3 N -0.530 5.530 4 C 0.063 3.937 5 C 0.027 3.973 6 C -0.521 4.521 7 H 0.053 0.947 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.080 3.920 15 C -0.167 4.167 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.133 4.133 19 H 0.064 0.936 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.017 0.983 25 H 0.060 0.940 26 H 0.025 0.975 27 H 0.016 0.984 28 H 0.260 0.740 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 2.048 -11.675 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.086 4.086 3 N -0.253 5.253 4 C -0.063 4.063 5 C -0.010 4.010 6 C -0.560 4.560 7 H 0.071 0.929 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.200 1.200 14 C -0.029 4.029 15 C -0.205 4.205 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.170 4.170 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.007 2.216 -11.082 15.096 hybrid contribution 1.483 -0.288 -0.450 1.577 sum -8.524 1.928 -11.533 14.470 Atomic orbital electron populations 1.22170 0.96221 1.00840 1.02094 1.22218 0.94900 0.90093 1.01345 1.62275 1.14952 1.14746 1.33334 1.22330 0.83893 1.00105 1.00006 1.19114 0.95778 0.95983 0.90160 1.21207 0.93840 1.39208 1.01705 0.92851 1.24989 0.97860 0.95278 0.96185 1.69969 1.35245 1.40639 1.07467 0.86606 0.85591 0.77743 0.78112 1.20646 1.21247 1.19959 1.22552 0.96316 0.96100 0.87925 1.23396 0.99338 1.00793 0.96997 1.22314 0.96711 0.99417 0.97388 1.22123 0.97907 1.00248 0.95874 1.22607 0.96090 1.01494 0.96856 0.91740 0.92066 0.93304 0.94703 0.89851 0.96504 0.92186 0.95635 0.96619 0.93035 0.90645 0.92104 0.89762 0.92308 0.92056 0.92248 0.92339 0.89195 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.02 37.16 0.30 -1.89 16 2 C 0.04 0.72 4.99 -3.83 -0.02 0.71 16 3 N -0.53 -9.84 4.53 -224.67 -1.02 -10.85 16 4 C 0.06 1.38 4.83 -3.82 -0.02 1.36 16 5 C 0.03 0.71 4.70 -27.88 -0.13 0.58 16 6 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.08 1.24 2.88 -66.05 -0.19 1.05 16 15 C -0.17 -2.26 5.44 -24.55 -0.13 -2.39 16 16 C -0.12 -1.35 6.84 -24.88 -0.17 -1.52 16 17 C -0.12 -1.36 6.28 -25.61 -0.16 -1.52 16 18 C -0.13 -1.76 5.65 -25.61 -0.14 -1.90 16 19 H 0.06 0.94 7.34 -51.93 -0.38 0.56 16 20 H 0.06 0.78 4.21 -51.93 -0.22 0.56 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.58 5.71 -51.93 -0.30 0.28 16 23 H 0.08 1.64 6.17 -51.93 -0.32 1.32 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 1.30 7.88 -51.93 -0.41 0.89 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.43 6.62 -51.93 -0.34 0.09 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.08 1.20 7.71 -51.93 -0.40 0.80 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.16 4.44 -51.93 -0.23 0.93 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.23 4.29 -51.92 -0.22 1.01 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -29.69 276.23 -8.37 -38.06 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.15 Total: -2.53 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.08 Total: -19.24 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.28 Total: -37.33 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.69 -8.37 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035766157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.657 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds