Wall clock time and date at job start Sun Mar 29 2020 21:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47086 * 2 1 4 4 C 1.46905 * 110.99991 * 171.92507 * 3 2 1 5 5 C 1.52994 * 109.46957 * 296.19821 * 4 3 2 6 6 C 1.50703 * 109.47328 * 185.79672 * 5 4 3 7 7 H 1.08000 * 119.99885 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00205 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99812 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47487 * 89.99752 * 10 8 6 12 12 H 1.48503 * 109.47136 * 209.99766 * 10 8 6 13 13 H 1.48504 * 109.47071 * 329.99443 * 10 8 6 14 14 C 1.46899 * 110.99975 * 295.87547 * 3 2 1 15 15 C 1.54893 * 110.48556 * 325.35310 * 14 3 2 16 16 C 1.55236 * 102.58752 * 156.67410 * 15 14 3 17 17 C 1.54268 * 104.23241 * 322.08496 * 16 15 14 18 18 C 1.53874 * 106.59771 * 23.61247 * 17 16 15 19 19 H 1.09002 * 109.47554 * 308.54245 * 1 2 3 20 20 H 1.09001 * 109.46736 * 68.53475 * 1 2 3 21 21 H 1.09003 * 109.47089 * 188.53416 * 1 2 3 22 22 H 1.08996 * 109.47307 * 239.99699 * 2 1 3 23 23 H 1.09001 * 109.46761 * 119.99427 * 2 1 3 24 24 H 1.08993 * 109.46955 * 56.19830 * 4 3 2 25 25 H 1.09004 * 109.46905 * 176.19662 * 4 3 2 26 26 H 1.09005 * 109.47396 * 305.79368 * 5 4 3 27 27 H 1.08997 * 109.47264 * 65.79302 * 5 4 3 28 28 H 0.96997 * 120.00373 * 180.02562 * 9 8 6 29 29 H 1.09003 * 110.44004 * 202.81393 * 14 3 2 30 30 H 1.08997 * 110.75461 * 275.06473 * 15 14 3 31 31 H 1.08997 * 110.75583 * 38.44052 * 15 14 3 32 32 H 1.09007 * 110.46926 * 203.39327 * 16 15 14 33 33 H 1.09006 * 110.58395 * 80.83050 * 16 15 14 34 34 H 1.09002 * 110.03109 * 264.32667 * 17 16 15 35 35 H 1.09000 * 110.07400 * 142.91853 * 17 16 15 36 36 H 1.09008 * 110.02953 * 240.71676 * 18 17 16 37 37 H 1.08994 * 110.03247 * 119.28892 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4753 1.4287 0.1926 5 6 3.8241 0.8687 1.5730 6 6 5.2990 1.0439 1.8283 7 1 5.9250 1.5079 1.0805 8 6 5.8493 0.6108 3.0160 9 7 5.0871 0.0454 3.9264 10 14 7.6776 0.8274 3.3320 11 1 7.9148 2.1386 3.9874 12 1 8.1594 -0.2630 4.2175 13 1 8.4120 0.7786 2.0422 14 6 1.6308 2.0808 -1.2339 15 6 1.6396 1.1018 -2.4342 16 6 0.6704 1.7855 -3.4356 17 6 -0.4430 2.3737 -2.5445 18 6 0.1677 2.5615 -1.1446 19 1 -0.3634 0.6403 0.8038 20 1 -0.3633 0.3761 -0.9564 21 1 -0.3633 -1.0163 0.1525 22 1 1.8933 -0.5139 -0.8899 23 1 1.8932 -0.5138 0.8901 24 1 3.9617 0.8288 -0.5764 25 1 3.8204 2.4602 0.1212 26 1 3.2575 1.4029 2.3357 27 1 3.5724 -0.1912 1.6093 28 1 5.4741 -0.2589 4.7621 29 1 2.2978 2.9220 -1.4230 30 1 2.6407 1.0183 -2.8572 31 1 1.2617 0.1235 -2.1374 32 1 0.2574 1.0517 -4.1278 33 1 1.1808 2.5788 -3.9820 34 1 -1.2852 1.6836 -2.4949 35 1 -0.7708 3.3347 -2.9407 36 1 -0.3783 1.9624 -0.4157 37 1 0.1369 3.6137 -0.8619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035766157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:58 Heat of formation + Delta-G solvation = -22.367694 kcal Electronic energy + Delta-G solvation = -14636.215531 eV Core-core repulsion = 12412.358581 eV Total energy + Delta-G solvation = -2223.856951 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61350 -36.70667 -34.98313 -32.53814 -30.79007 -29.64575 -27.98920 -25.72490 -23.79421 -22.14317 -20.93577 -20.38974 -18.64861 -17.24119 -16.73593 -16.34326 -15.73990 -15.43340 -15.07677 -14.34860 -14.26863 -13.85741 -13.41499 -13.19989 -13.06514 -12.76310 -12.65566 -12.33041 -12.16676 -12.05374 -11.89599 -11.80939 -11.68354 -11.27815 -11.25028 -11.12396 -10.87526 -10.53906 -9.03210 -8.20726 -6.32324 1.39205 1.41182 1.52070 2.39735 3.08160 3.12406 3.78254 3.84696 4.02215 4.20070 4.34999 4.40388 4.56791 4.58458 4.61355 4.67470 4.73188 4.76727 4.90289 4.91635 5.05190 5.06993 5.14493 5.18824 5.22839 5.29435 5.40450 5.45493 5.53432 5.55222 5.67667 5.80467 6.15420 6.38282 6.42882 6.84717 7.36763 8.91541 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056075 B = 0.006497 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.207736 B = 4308.777894 C = 4546.351776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 N -0.542 5.542 4 C 0.081 3.919 5 C 0.037 3.963 6 C -0.546 4.546 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.967 3.033 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.263 1.263 14 C 0.073 3.927 15 C -0.165 4.165 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.131 4.131 19 H 0.056 0.944 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.016 0.984 25 H 0.057 0.943 26 H -0.008 1.008 27 H -0.007 1.007 28 H 0.264 0.736 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.099 2.469 -13.277 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 N -0.265 5.265 4 C -0.047 4.047 5 C 0.000 4.000 6 C -0.584 4.584 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.792 3.208 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.188 1.188 14 C -0.035 4.035 15 C -0.203 4.203 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.169 4.169 19 H 0.075 0.925 20 H 0.099 0.901 21 H 0.083 0.917 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.317 2.645 -12.706 16.579 hybrid contribution 1.541 -0.422 0.062 1.599 sum -8.776 2.223 -12.644 15.551 Atomic orbital electron populations 1.22092 0.93355 1.01921 1.02867 1.22219 0.97200 0.89169 0.99967 1.62223 1.12511 1.15861 1.35954 1.21945 0.86461 0.99316 0.96953 1.18925 0.94701 0.94328 0.92069 1.21634 0.94999 1.39526 1.02285 0.92336 1.25971 1.03285 0.94600 0.95783 1.70108 1.37665 1.41388 1.08028 0.85418 0.79016 0.78015 0.78397 1.19691 1.20575 1.18766 1.22688 0.97638 0.96035 0.87175 1.23347 0.99799 1.00371 0.96815 1.22300 0.96066 0.99791 0.97010 1.22101 0.97955 1.01510 0.93929 1.22586 0.94386 1.01279 0.98611 0.92499 0.90121 0.91651 0.93894 0.93409 0.96572 0.92407 0.99003 0.98869 0.92723 0.91437 0.92923 0.89915 0.90550 0.91455 0.90879 0.90796 0.89605 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 8.02 71.98 0.58 -3.33 16 2 C 0.04 1.47 4.99 86.30 0.43 1.90 16 3 N -0.54 -20.44 4.53 -864.71 -3.91 -24.35 16 4 C 0.08 3.62 4.83 86.30 0.42 4.04 16 5 C 0.04 2.06 4.70 29.85 0.14 2.21 16 6 C -0.55 -32.17 9.11 25.60 0.23 -31.93 16 7 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 8 C 0.00 0.09 5.46 84.66 0.46 0.55 16 9 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 10 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 14 C 0.07 2.19 2.88 45.99 0.13 2.32 16 15 C -0.16 -4.18 5.44 32.01 0.17 -4.01 16 16 C -0.11 -2.18 6.84 31.79 0.22 -1.96 16 17 C -0.12 -2.16 6.28 31.32 0.20 -1.97 16 18 C -0.13 -3.21 5.65 31.32 0.18 -3.04 16 19 H 0.06 1.62 7.34 -2.39 -0.02 1.60 16 20 H 0.08 1.85 4.21 -2.39 -0.01 1.84 16 21 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.04 1.42 5.71 -2.39 -0.01 1.41 16 23 H 0.05 1.99 6.17 -2.39 -0.01 1.97 16 24 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 2.57 7.88 -2.38 -0.02 2.55 16 26 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 27 H -0.01 -0.41 6.62 -2.39 -0.02 -0.43 16 28 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.07 2.11 7.71 -2.39 -0.02 2.09 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 2.13 4.44 -2.39 -0.01 2.12 16 32 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.19 7.82 -2.39 -0.02 1.17 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 2.19 4.29 -2.38 -0.01 2.18 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.90 276.23 2.58 -62.32 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.02 Total: 7.92 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 3.16 Total: -35.23 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -3.63 Total: -82.15 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.90 2.58 -62.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035766157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.954 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds