Wall clock time and date at job start Sun Mar 29 2020 21:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38320 * 119.95617 * 2 1 4 4 C 1.38277 * 120.14837 * 180.02562 * 3 2 1 5 5 C 1.38219 * 120.05401 * 359.97438 * 4 3 2 6 6 Cl 1.73601 * 120.04322 * 179.97438 * 5 4 3 7 7 C 1.38973 * 119.91023 * 359.97438 * 5 4 3 8 8 O 1.35770 * 120.07199 * 179.72583 * 7 5 4 9 9 C 1.34820 * 116.99789 * 174.68693 * 8 7 5 10 10 H 1.08004 * 120.00124 * 5.07584 * 9 8 7 11 11 C 1.38650 * 120.00262 * 185.07312 * 9 8 7 12 12 N 1.31561 * 119.99864 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00378 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46923 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47495 * 119.99727 * 13 11 9 16 16 H 1.48497 * 109.47117 * 239.99975 * 13 11 9 17 17 C 1.38101 * 119.95255 * 179.97438 * 2 1 3 18 18 H 1.09005 * 109.46310 * 90.00170 * 1 2 3 19 19 H 1.08997 * 109.47172 * 209.99605 * 1 2 3 20 20 H 1.08999 * 109.46908 * 330.00638 * 1 2 3 21 21 H 1.07997 * 119.92229 * 359.97438 * 3 2 1 22 22 H 1.07992 * 119.97233 * 179.97438 * 4 3 2 23 23 H 0.96995 * 120.00551 * 180.02562 * 12 11 9 24 24 H 1.08007 * 120.02821 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1984 0.0000 4 6 3.5805 1.2031 -0.0005 5 6 4.2767 0.0090 -0.0005 6 17 6.0127 0.0152 -0.0019 7 6 3.5851 -1.1964 0.0005 8 8 4.2657 -2.3712 -0.0051 9 6 3.5381 -3.5006 0.1076 10 1 2.4592 -3.4495 0.1143 11 6 4.1746 -4.7277 0.2147 12 7 5.4887 -4.7900 0.2059 13 14 3.1665 -6.2925 0.3700 14 1 1.7207 -5.9536 0.3541 15 1 3.4761 -7.1959 -0.7672 16 1 3.5010 -6.9721 1.6473 17 6 2.1966 -1.1966 0.0005 18 1 -0.3632 0.0000 -1.0278 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5137 21 1 1.6558 2.1326 -0.0004 22 1 4.1168 2.1404 -0.0010 23 1 5.9341 -5.6484 0.2805 24 1 1.6562 -2.1317 0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036667496.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:06 Heat of formation + Delta-G solvation = -19.734516 kcal Electronic energy + Delta-G solvation = -11606.780113 eV Core-core repulsion = 9318.528564 eV Total energy + Delta-G solvation = -2288.251548 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.15537 -36.70232 -35.52130 -32.45130 -31.64399 -29.07033 -26.49413 -25.20221 -21.81508 -20.69560 -18.02437 -16.92323 -15.34380 -14.93370 -14.44686 -13.98565 -13.57517 -13.00894 -12.89054 -12.82906 -12.04713 -11.72455 -11.67516 -11.05976 -10.94312 -10.85545 -10.49054 -10.30513 -9.96516 -9.47694 -8.89723 -7.97882 -7.26660 -6.49457 -4.08860 1.93899 2.22462 3.09593 3.10698 3.14516 3.16855 3.91451 4.36673 5.00249 5.11520 5.37282 5.46665 5.80028 5.90537 5.91732 6.15651 6.16932 6.55226 6.62777 6.89350 6.95761 7.22026 7.30241 7.62349 7.91903 8.94139 9.60233 10.67178 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.011713 C = 0.008342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.696409 B = 2389.951437 C = 3355.526773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.041 4.041 3 C -0.207 4.207 4 C -0.065 4.065 5 C -0.113 4.113 6 Cl -0.082 7.082 7 C 0.160 3.840 8 O -0.157 6.157 9 C -0.396 4.396 10 H 0.094 0.906 11 C 0.042 3.958 12 N -0.852 5.852 13 Si 0.942 3.058 14 H -0.266 1.266 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.226 4.226 18 H 0.066 0.934 19 H 0.063 0.937 20 H 0.061 0.939 21 H 0.113 0.887 22 H 0.121 0.879 23 H 0.271 0.729 24 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 6.688 -0.123 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.042 4.042 3 C -0.226 4.226 4 C -0.084 4.084 5 C -0.141 4.141 6 Cl -0.054 7.054 7 C 0.104 3.896 8 O -0.059 6.059 9 C -0.472 4.472 10 H 0.111 0.889 11 C -0.163 4.163 12 N -0.486 5.486 13 Si 0.766 3.234 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.245 4.245 18 H 0.084 0.916 19 H 0.082 0.918 20 H 0.080 0.920 21 H 0.131 0.869 22 H 0.139 0.861 23 H 0.081 0.919 24 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.731 6.422 -0.127 8.608 hybrid contribution -0.327 -0.776 0.069 0.845 sum -6.058 5.646 -0.058 8.281 Atomic orbital electron populations 1.20751 0.92024 1.02122 1.01783 1.19632 0.95228 0.92832 0.96467 1.20388 0.93017 0.96890 1.12348 1.20553 0.93943 0.95291 0.98568 1.19965 0.83820 0.92646 1.17637 1.98298 1.10681 1.98906 1.97475 1.19014 0.90371 0.86949 0.93258 1.84062 1.34360 1.10503 1.77007 1.21415 0.91266 0.81949 1.52574 0.88890 1.25314 0.96116 0.98593 0.96287 1.70068 1.07507 1.26297 1.44701 0.85637 0.79203 0.80178 0.78344 1.19039 1.20072 1.20064 1.20969 0.93012 0.98393 1.12158 0.91567 0.91834 0.92027 0.86858 0.86108 0.91922 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 36.01 0.36 -1.16 14 2 C -0.04 -0.75 5.88 -104.64 -0.62 -1.36 14 3 C -0.21 -3.56 9.70 -39.54 -0.38 -3.94 14 4 C -0.06 -1.19 9.82 -39.57 -0.39 -1.58 14 5 C -0.11 -2.49 6.34 -39.32 -0.25 -2.74 14 6 Cl -0.08 -1.77 28.51 -51.86 -1.48 -3.24 14 7 C 0.16 3.91 6.64 -39.08 -0.26 3.65 14 8 O -0.16 -4.48 9.22 0.02 0.00 -4.48 14 9 C -0.40 -10.95 9.49 30.88 0.29 -10.66 14 10 H 0.09 2.37 5.20 -52.48 -0.27 2.09 14 11 C 0.04 1.16 5.49 -17.52 -0.10 1.06 14 12 N -0.85 -24.83 13.67 55.48 0.76 -24.08 14 13 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 14 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 14 15 H -0.28 -5.81 7.11 56.52 0.40 -5.41 14 16 H -0.28 -5.81 7.11 56.52 0.40 -5.41 14 17 C -0.23 -4.87 8.82 -39.40 -0.35 -5.22 14 18 H 0.07 0.83 8.14 -51.93 -0.42 0.41 14 19 H 0.06 0.84 8.08 -51.93 -0.42 0.42 14 20 H 0.06 0.72 8.08 -51.93 -0.42 0.30 14 21 H 0.11 1.59 8.06 -52.49 -0.42 1.17 14 22 H 0.12 1.88 8.06 -52.49 -0.42 1.46 14 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 14 24 H 0.13 2.85 5.64 -52.48 -0.30 2.55 14 LS Contribution 234.04 15.07 3.53 3.53 Total: -1.00 -29.85 234.04 -5.71 -35.57 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -1.81 Total: -0.59 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -1.69 Total: -21.94 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.76 Total: -24.08 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: 0.00 Total: -4.48 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.48 Total: -3.24 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.85 -5.71 -35.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667496.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.831 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds