Wall clock time and date at job start Sun Mar 29 2020 21:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38320 * 119.95617 * 2 1 4 4 C 1.38277 * 120.14837 * 180.02562 * 3 2 1 5 5 C 1.38219 * 120.05401 * 359.97438 * 4 3 2 6 6 Cl 1.73601 * 120.04322 * 179.97438 * 5 4 3 7 7 C 1.38973 * 119.91023 * 359.97438 * 5 4 3 8 8 O 1.35770 * 120.07199 * 179.72583 * 7 5 4 9 9 C 1.34820 * 116.99789 * 174.68693 * 8 7 5 10 10 H 1.08004 * 120.00124 * 5.07584 * 9 8 7 11 11 C 1.38650 * 120.00262 * 185.07312 * 9 8 7 12 12 N 1.31561 * 119.99864 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00378 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46923 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47495 * 119.99727 * 13 11 9 16 16 H 1.48497 * 109.47117 * 239.99975 * 13 11 9 17 17 C 1.38101 * 119.95255 * 179.97438 * 2 1 3 18 18 H 1.09005 * 109.46310 * 90.00170 * 1 2 3 19 19 H 1.08997 * 109.47172 * 209.99605 * 1 2 3 20 20 H 1.08999 * 109.46908 * 330.00638 * 1 2 3 21 21 H 1.07997 * 119.92229 * 359.97438 * 3 2 1 22 22 H 1.07992 * 119.97233 * 179.97438 * 4 3 2 23 23 H 0.96995 * 120.00551 * 180.02562 * 12 11 9 24 24 H 1.08007 * 120.02821 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1984 0.0000 4 6 3.5805 1.2031 -0.0005 5 6 4.2767 0.0090 -0.0005 6 17 6.0127 0.0152 -0.0019 7 6 3.5851 -1.1964 0.0005 8 8 4.2657 -2.3712 -0.0051 9 6 3.5381 -3.5006 0.1076 10 1 2.4592 -3.4495 0.1143 11 6 4.1746 -4.7277 0.2147 12 7 5.4887 -4.7900 0.2059 13 14 3.1665 -6.2925 0.3700 14 1 1.7207 -5.9536 0.3541 15 1 3.4761 -7.1959 -0.7672 16 1 3.5010 -6.9721 1.6473 17 6 2.1966 -1.1966 0.0005 18 1 -0.3632 0.0000 -1.0278 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5137 21 1 1.6558 2.1326 -0.0004 22 1 4.1168 2.1404 -0.0010 23 1 5.9341 -5.6484 0.2805 24 1 1.6562 -2.1317 0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036667496.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:06 Heat of formation + Delta-G solvation = -37.968842 kcal Electronic energy + Delta-G solvation = -11607.570812 eV Core-core repulsion = 9318.528564 eV Total energy + Delta-G solvation = -2289.042248 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.85964 -38.42430 -37.18890 -34.37126 -33.12363 -30.72550 -28.05520 -26.96327 -23.47738 -22.25969 -19.88069 -18.70171 -16.98629 -16.65186 -16.13501 -15.76719 -15.09073 -14.65070 -14.41020 -14.22231 -13.61498 -13.38529 -13.17977 -12.74245 -12.49499 -12.29545 -12.10983 -11.83345 -11.66992 -11.28943 -10.82063 -9.55368 -8.98080 -8.47177 -6.16017 0.35667 0.62240 1.35210 1.43781 1.47409 1.53831 2.16333 2.73382 3.08841 3.38237 4.01909 4.06719 4.38646 4.48631 4.77698 4.84264 4.90879 5.01418 5.08944 5.26245 5.41781 5.49107 5.76006 5.96723 6.10034 6.95839 7.72078 8.74923 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.011713 C = 0.008342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.696409 B = 2389.951437 C = 3355.526773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.039 4.039 3 C -0.182 4.182 4 C -0.061 4.061 5 C -0.133 4.133 6 Cl -0.089 7.089 7 C 0.121 3.879 8 O -0.210 6.210 9 C -0.417 4.417 10 H 0.104 0.896 11 C -0.019 4.019 12 N -0.913 5.913 13 Si 1.019 2.981 14 H -0.249 1.249 15 H -0.269 1.269 16 H -0.270 1.270 17 C -0.239 4.239 18 H 0.084 0.916 19 H 0.065 0.935 20 H 0.092 0.908 21 H 0.163 0.837 22 H 0.155 0.845 23 H 0.273 0.727 24 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 8.531 -0.069 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.039 4.039 3 C -0.201 4.201 4 C -0.080 4.080 5 C -0.161 4.161 6 Cl -0.061 7.061 7 C 0.069 3.931 8 O -0.116 6.116 9 C -0.493 4.493 10 H 0.121 0.879 11 C -0.217 4.217 12 N -0.551 5.551 13 Si 0.838 3.162 14 H -0.172 1.172 15 H -0.194 1.194 16 H -0.195 1.195 17 C -0.258 4.258 18 H 0.102 0.898 19 H 0.084 0.916 20 H 0.110 0.890 21 H 0.180 0.820 22 H 0.172 0.828 23 H 0.082 0.918 24 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.568 8.326 -0.077 11.947 hybrid contribution 0.414 -0.973 0.039 1.058 sum -8.154 7.353 -0.038 10.980 Atomic orbital electron populations 1.20851 0.88395 1.03820 1.03408 1.20189 0.97855 0.91712 0.94160 1.21036 0.92550 0.98459 1.08039 1.21043 0.94883 0.95152 0.96912 1.20403 0.83879 0.93315 1.18503 1.98287 1.11322 1.98920 1.97569 1.19626 0.91977 0.86801 0.94685 1.84033 1.35727 1.11629 1.80198 1.21904 0.91978 0.82570 1.52863 0.87872 1.26584 0.97329 1.02118 0.95679 1.70214 1.09705 1.27246 1.47886 0.84530 0.78135 0.75097 0.78441 1.17209 1.19442 1.19478 1.21146 0.92104 0.99908 1.12686 0.89776 0.91640 0.88964 0.81994 0.82761 0.91835 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 10.01 71.24 0.71 -1.75 14 2 C -0.04 -1.27 5.88 -19.88 -0.12 -1.38 14 3 C -0.18 -5.35 9.70 22.30 0.22 -5.13 14 4 C -0.06 -2.07 9.82 22.27 0.22 -1.85 14 5 C -0.13 -5.84 6.34 22.44 0.14 -5.70 14 6 Cl -0.09 -3.91 28.51 -2.72 -0.08 -3.99 14 7 C 0.12 6.07 6.64 22.59 0.15 6.22 14 8 O -0.21 -12.60 9.22 -22.86 -0.21 -12.81 14 9 C -0.42 -24.07 9.49 67.92 0.64 -23.43 14 10 H 0.10 5.43 5.20 -2.91 -0.02 5.41 14 11 C -0.02 -1.05 5.49 84.83 0.47 -0.59 14 12 N -0.91 -56.07 13.67 21.61 0.30 -55.78 14 13 Si 1.02 42.49 29.55 68.60 2.03 44.52 14 14 H -0.25 -9.48 7.11 99.48 0.71 -8.78 14 15 H -0.27 -10.83 7.11 99.48 0.71 -10.12 14 16 H -0.27 -10.86 7.11 99.48 0.71 -10.15 14 17 C -0.24 -10.18 8.82 22.39 0.20 -9.99 14 18 H 0.08 1.68 8.14 -2.38 -0.02 1.66 14 19 H 0.06 1.49 8.08 -2.39 -0.02 1.47 14 20 H 0.09 1.58 8.08 -2.39 -0.02 1.56 14 21 H 0.16 3.31 8.06 -2.91 -0.02 3.29 14 22 H 0.15 4.14 8.06 -2.91 -0.02 4.12 14 23 H 0.27 15.31 8.31 -92.71 -0.77 14.54 14 24 H 0.13 5.44 5.64 -2.91 -0.02 5.42 14 Total: -1.00 -69.11 234.04 5.88 -63.23 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.21 Total: 8.42 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 2.63 Total: -43.60 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.30 Total: -55.78 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.21 Total: -12.81 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: -3.91 SS G_CDS: -0.08 Total: -3.99 kcal Total: -69.11 5.88 -63.23 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667496.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.260 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds