Wall clock time and date at job start Sun Mar 29 2020 21:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47506 * 2 1 4 4 H 1.09003 * 109.47222 * 177.44546 * 3 2 1 5 5 C 1.50701 * 109.47513 * 297.44900 * 3 2 1 6 6 H 1.07993 * 120.00516 * 119.99517 * 5 3 2 7 7 C 1.37885 * 119.99361 * 300.00136 * 5 3 2 8 8 N 1.31508 * 120.00160 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46549 * 89.99997 * 9 7 5 11 11 H 1.48488 * 109.47171 * 209.99731 * 9 7 5 12 12 H 1.48497 * 109.47374 * 330.00305 * 9 7 5 13 13 N 1.46909 * 109.47048 * 57.44451 * 3 2 1 14 14 C 1.46845 * 110.99524 * 54.37946 * 13 3 2 15 15 C 1.53041 * 109.51836 * 185.83801 * 14 13 3 16 16 C 1.53118 * 109.27903 * 300.81724 * 15 14 13 17 17 C 1.52999 * 109.52125 * 177.56046 * 16 15 14 18 18 C 1.53121 * 109.16104 * 57.65844 * 16 15 14 19 19 C 1.46849 * 110.99731 * 178.58352 * 13 3 2 20 20 H 1.09004 * 109.46826 * 55.27711 * 1 2 3 21 21 H 1.09002 * 109.47560 * 295.27868 * 1 2 3 22 22 H 1.09002 * 109.47439 * 175.27805 * 1 2 3 23 23 H 1.09003 * 109.46663 * 120.00296 * 2 1 3 24 24 H 1.08999 * 109.47163 * 239.99444 * 2 1 3 25 25 H 0.96997 * 119.99726 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.46302 * 305.84679 * 14 13 3 27 27 H 1.08998 * 109.46693 * 65.82654 * 14 13 3 28 28 H 1.09003 * 109.50214 * 180.87835 * 15 14 13 29 29 H 1.09004 * 109.53374 * 60.78112 * 15 14 13 30 30 H 1.09000 * 109.52343 * 297.75198 * 16 15 14 31 31 H 1.08997 * 109.47242 * 300.31356 * 17 16 15 32 32 H 1.08999 * 109.47151 * 60.32183 * 17 16 15 33 33 H 1.09005 * 109.46852 * 180.31672 * 17 16 15 34 34 H 1.08994 * 109.50313 * 182.40928 * 18 16 15 35 35 H 1.08997 * 109.50351 * 62.27928 * 18 16 15 36 36 H 1.09003 * 109.46218 * 294.17881 * 19 13 3 37 37 H 1.09000 * 109.46519 * 54.14995 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1291 1.4427 0.0458 5 6 1.5901 2.1344 -1.2608 6 1 0.9659 3.0137 -1.2010 7 6 1.9753 1.6448 -2.4909 8 7 2.7357 0.5744 -2.5638 9 14 1.4171 2.5022 -4.0539 10 1 2.4114 3.5383 -4.4322 11 1 1.2984 1.5066 -5.1492 12 1 0.0977 3.1433 -3.8226 13 7 1.5006 2.1525 1.1674 14 6 1.8070 1.4317 2.4096 15 6 1.1088 2.1192 3.5852 16 6 1.5915 3.5690 3.6822 17 6 0.8521 4.2792 4.8178 18 6 1.3044 4.2839 2.3589 19 6 1.9969 3.5337 1.2188 20 1 -0.3633 0.5854 -0.8447 21 1 -0.3634 0.4388 0.9292 22 1 -0.3634 -1.0242 -0.0846 23 1 1.8932 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 3.0070 0.2302 -3.4291 26 1 1.4548 0.4034 2.3290 27 1 2.8843 1.4346 2.5750 28 1 1.3490 1.5931 4.5092 29 1 0.0303 2.1044 3.4278 30 1 2.6635 3.5837 3.8790 31 1 -0.2198 4.2612 4.6207 32 1 1.0571 3.7697 5.7594 33 1 1.1923 5.3128 4.8825 34 1 1.6844 5.3043 2.4066 35 1 0.2291 4.3031 2.1815 36 1 3.0734 3.5266 1.3897 37 1 1.7827 4.0320 0.2733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:23 Heat of formation + Delta-G solvation = -18.856540 kcal Electronic energy + Delta-G solvation = -15078.945613 eV Core-core repulsion = 12855.240917 eV Total energy + Delta-G solvation = -2223.704696 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.58485 -35.27485 -32.39698 -31.00030 -30.02114 -27.65958 -25.69126 -23.39439 -22.26961 -21.42305 -19.42329 -18.70650 -16.06666 -15.42584 -14.40191 -14.10651 -14.02646 -13.61248 -13.42360 -12.85765 -12.73059 -12.08289 -11.81666 -11.64231 -11.53776 -11.26177 -10.90110 -10.77549 -10.61220 -10.42670 -10.29712 -10.02665 -9.82144 -9.71183 -9.50151 -9.25481 -8.72023 -8.35211 -7.03490 -5.96377 -3.99627 3.32278 3.39254 3.43170 4.44112 4.99210 5.16255 5.24714 5.28006 5.35915 5.79702 5.82527 5.92078 5.96328 6.07768 6.10757 6.17747 6.39822 6.42154 6.46490 6.50551 6.61515 6.61895 6.70937 6.78002 6.88595 6.90602 7.16378 7.38694 7.48187 7.71577 7.82215 7.88821 8.29946 8.41455 8.69161 9.06566 9.64222 11.10038 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040670 B = 0.009348 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.301129 B = 2994.724495 C = 3381.158524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.216 3.784 4 H -0.005 1.005 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.528 5.528 14 C 0.050 3.950 15 C -0.108 4.108 16 C -0.094 4.094 17 C -0.143 4.143 18 C -0.110 4.110 19 C 0.064 3.936 20 H 0.059 0.941 21 H 0.040 0.960 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.092 0.908 25 H 0.259 0.741 26 H 0.074 0.926 27 H 0.015 0.985 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.015 0.985 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.400 3.661 9.812 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.012 0.988 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.253 5.253 14 C -0.078 4.078 15 C -0.146 4.146 16 C -0.112 4.112 17 C -0.201 4.201 18 C -0.148 4.148 19 C -0.064 4.064 20 H 0.078 0.922 21 H 0.059 0.941 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.110 0.890 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.823 3.556 9.614 10.632 hybrid contribution 0.722 0.330 -0.817 1.139 sum -2.101 3.886 8.797 9.844 Atomic orbital electron populations 1.21475 0.97298 0.97565 1.01484 1.21599 0.95130 0.98326 1.00118 1.19245 0.92257 0.90692 0.86753 0.98773 1.21077 1.30661 1.11781 0.89681 0.92022 1.24910 0.95295 0.95102 0.98926 1.69876 1.36346 1.22561 1.24552 0.86586 0.79085 0.79219 0.83068 1.20904 1.21339 1.19866 1.62022 1.59908 1.01262 1.02096 1.22082 0.96500 0.98489 0.90753 1.21627 1.00971 0.94721 0.97233 1.21178 0.99310 0.95635 0.95108 1.21812 1.00504 0.99771 0.97965 1.21673 1.01407 0.97578 0.94143 1.21919 0.95177 0.90904 0.98422 0.92215 0.94113 0.96610 0.96784 0.88975 0.93080 0.90796 0.96678 0.92892 0.91569 0.92151 0.92806 0.93300 0.93224 0.92811 0.91596 0.96729 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.41 37.16 0.35 -2.34 16 2 C -0.11 -2.74 4.95 -26.74 -0.13 -2.88 16 3 C 0.22 5.45 1.76 -68.86 -0.12 5.33 16 4 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 5 C -0.49 -13.32 6.64 -34.44 -0.23 -13.55 16 6 H 0.06 1.68 6.81 -52.49 -0.36 1.32 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.46 11.30 55.43 0.63 -24.83 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.53 -11.36 3.78 -228.07 -0.86 -12.22 16 14 C 0.05 0.95 4.83 -3.83 -0.02 0.93 16 15 C -0.11 -1.66 5.38 -26.65 -0.14 -1.81 16 16 C -0.09 -1.36 2.79 -90.50 -0.25 -1.61 16 17 C -0.14 -1.70 9.20 37.16 0.34 -1.36 16 18 C -0.11 -1.77 5.38 -26.65 -0.14 -1.91 16 19 C 0.06 1.28 5.27 -3.83 -0.02 1.26 16 20 H 0.06 1.44 7.15 -51.93 -0.37 1.07 16 21 H 0.04 0.86 7.18 -51.93 -0.37 0.48 16 22 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.01 0.31 6.36 -51.93 -0.33 -0.02 16 24 H 0.09 2.49 6.01 -51.93 -0.31 2.17 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.07 1.41 5.59 -51.93 -0.29 1.12 16 27 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 1.78 6.39 -51.93 -0.33 1.45 16 LS Contribution 278.34 15.07 4.19 4.19 Total: -1.00 -27.53 278.34 -8.10 -35.63 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.57 Total: -2.67 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.46 Total: -16.43 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.23 Total: -37.05 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.53 -8.10 -35.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.773 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds