Wall clock time and date at job start Sun Mar 29 2020 21:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47506 * 2 1 4 4 H 1.09003 * 109.47222 * 177.44546 * 3 2 1 5 5 C 1.50701 * 109.47513 * 297.44900 * 3 2 1 6 6 H 1.07993 * 120.00516 * 119.99517 * 5 3 2 7 7 C 1.37885 * 119.99361 * 300.00136 * 5 3 2 8 8 N 1.31508 * 120.00160 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46549 * 89.99997 * 9 7 5 11 11 H 1.48488 * 109.47171 * 209.99731 * 9 7 5 12 12 H 1.48497 * 109.47374 * 330.00305 * 9 7 5 13 13 N 1.46909 * 109.47048 * 57.44451 * 3 2 1 14 14 C 1.46845 * 110.99524 * 54.37946 * 13 3 2 15 15 C 1.53041 * 109.51836 * 185.83801 * 14 13 3 16 16 C 1.53118 * 109.27903 * 300.81724 * 15 14 13 17 17 C 1.52999 * 109.52125 * 177.56046 * 16 15 14 18 18 C 1.53121 * 109.16104 * 57.65844 * 16 15 14 19 19 C 1.46849 * 110.99731 * 178.58352 * 13 3 2 20 20 H 1.09004 * 109.46826 * 55.27711 * 1 2 3 21 21 H 1.09002 * 109.47560 * 295.27868 * 1 2 3 22 22 H 1.09002 * 109.47439 * 175.27805 * 1 2 3 23 23 H 1.09003 * 109.46663 * 120.00296 * 2 1 3 24 24 H 1.08999 * 109.47163 * 239.99444 * 2 1 3 25 25 H 0.96997 * 119.99726 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.46302 * 305.84679 * 14 13 3 27 27 H 1.08998 * 109.46693 * 65.82654 * 14 13 3 28 28 H 1.09003 * 109.50214 * 180.87835 * 15 14 13 29 29 H 1.09004 * 109.53374 * 60.78112 * 15 14 13 30 30 H 1.09000 * 109.52343 * 297.75198 * 16 15 14 31 31 H 1.08997 * 109.47242 * 300.31356 * 17 16 15 32 32 H 1.08999 * 109.47151 * 60.32183 * 17 16 15 33 33 H 1.09005 * 109.46852 * 180.31672 * 17 16 15 34 34 H 1.08994 * 109.50313 * 182.40928 * 18 16 15 35 35 H 1.08997 * 109.50351 * 62.27928 * 18 16 15 36 36 H 1.09003 * 109.46218 * 294.17881 * 19 13 3 37 37 H 1.09000 * 109.46519 * 54.14995 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1291 1.4427 0.0458 5 6 1.5901 2.1344 -1.2608 6 1 0.9659 3.0137 -1.2010 7 6 1.9753 1.6448 -2.4909 8 7 2.7357 0.5744 -2.5638 9 14 1.4171 2.5022 -4.0539 10 1 2.4114 3.5383 -4.4322 11 1 1.2984 1.5066 -5.1492 12 1 0.0977 3.1433 -3.8226 13 7 1.5006 2.1525 1.1674 14 6 1.8070 1.4317 2.4096 15 6 1.1088 2.1192 3.5852 16 6 1.5915 3.5690 3.6822 17 6 0.8521 4.2792 4.8178 18 6 1.3044 4.2839 2.3589 19 6 1.9969 3.5337 1.2188 20 1 -0.3633 0.5854 -0.8447 21 1 -0.3634 0.4388 0.9292 22 1 -0.3634 -1.0242 -0.0846 23 1 1.8932 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 3.0070 0.2302 -3.4291 26 1 1.4548 0.4034 2.3290 27 1 2.8843 1.4346 2.5750 28 1 1.3490 1.5931 4.5092 29 1 0.0303 2.1044 3.4278 30 1 2.6635 3.5837 3.8790 31 1 -0.2198 4.2612 4.6207 32 1 1.0571 3.7697 5.7594 33 1 1.1923 5.3128 4.8825 34 1 1.6844 5.3043 2.4066 35 1 0.2291 4.3031 2.1815 36 1 3.0734 3.5266 1.3897 37 1 1.7827 4.0320 0.2733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:22 Heat of formation + Delta-G solvation = -34.220449 kcal Electronic energy + Delta-G solvation = -15079.611842 eV Core-core repulsion = 12855.240917 eV Total energy + Delta-G solvation = -2224.370925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13593 -36.92803 -34.23984 -32.75503 -31.53751 -29.21638 -27.45149 -25.20730 -23.78803 -22.91128 -21.03963 -20.30898 -18.12627 -17.25048 -16.10613 -15.67925 -15.56679 -15.14322 -14.82559 -14.53314 -14.29987 -13.83251 -13.45054 -13.08301 -12.85019 -12.78629 -12.64013 -12.47940 -12.38269 -12.02368 -11.89508 -11.75429 -11.45407 -11.30923 -11.21207 -10.85484 -10.66955 -10.41920 -8.84065 -8.07631 -6.17704 1.40957 1.42457 1.52698 2.43312 3.19753 3.41378 3.96776 4.00457 4.06029 4.43145 4.51021 4.59949 4.64206 4.70493 4.75393 4.85346 4.90467 4.92605 4.94836 5.07433 5.13990 5.22363 5.28127 5.32123 5.35329 5.37968 5.48855 5.53089 5.64089 5.74881 5.80097 5.90911 6.34305 6.49309 6.82947 6.96371 7.50103 8.97971 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040670 B = 0.009348 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.301129 B = 2994.724495 C = 3381.158524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C 0.222 3.778 4 H -0.051 1.051 5 C -0.502 4.502 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.529 5.529 14 C 0.047 3.953 15 C -0.100 4.100 16 C -0.092 4.092 17 C -0.136 4.136 18 C -0.101 4.101 19 C 0.063 3.937 20 H 0.036 0.964 21 H 0.052 0.948 22 H 0.037 0.963 23 H 0.028 0.972 24 H 0.062 0.938 25 H 0.260 0.740 26 H 0.070 0.930 27 H 0.005 0.995 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.002 0.998 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 4.475 11.251 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.148 4.148 3 C 0.115 3.885 4 H -0.033 1.033 5 C -0.540 4.540 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.254 5.254 14 C -0.081 4.081 15 C -0.138 4.138 16 C -0.111 4.111 17 C -0.193 4.193 18 C -0.139 4.139 19 C -0.066 4.066 20 H 0.055 0.945 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.023 0.977 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.020 0.980 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.039 4.381 11.073 12.574 hybrid contribution 1.152 0.066 -1.239 1.694 sum -2.887 4.446 9.833 11.171 Atomic orbital electron populations 1.21320 0.95474 0.98618 1.01040 1.21472 0.96612 0.97398 0.99287 1.19045 0.89605 0.91819 0.88072 1.03334 1.21268 1.30376 1.11622 0.90764 0.92652 1.25649 0.95406 0.95724 1.01879 1.70014 1.37287 1.23736 1.25144 0.85623 0.78807 0.78227 0.79409 1.20470 1.20981 1.19250 1.62011 1.59389 1.01901 1.02130 1.22190 0.96426 0.98590 0.90861 1.21599 1.00443 0.95319 0.96430 1.21176 0.99685 0.95072 0.95170 1.21734 1.00194 1.00201 0.97167 1.21615 1.00745 0.98193 0.93345 1.21950 0.94962 0.90414 0.99242 0.94496 0.92863 0.94444 0.95379 0.91993 0.93118 0.91173 0.97679 0.90304 0.91488 0.92338 0.92503 0.91798 0.92105 0.90809 0.91706 0.97995 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 9.41 71.98 0.68 -4.02 16 2 C -0.11 -5.36 4.95 30.59 0.15 -5.21 16 3 C 0.22 11.51 1.76 44.16 0.08 11.58 16 4 H -0.05 -3.03 8.14 -2.39 -0.02 -3.05 16 5 C -0.50 -27.78 6.64 25.60 0.17 -27.61 16 6 H 0.06 3.07 6.81 -2.91 -0.02 3.05 16 7 C 0.01 0.65 5.30 84.66 0.45 1.09 16 8 N -0.92 -53.86 11.30 21.45 0.24 -53.62 16 9 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 N -0.53 -22.94 3.78 -875.48 -3.31 -26.25 16 14 C 0.05 1.75 4.83 86.33 0.42 2.17 16 15 C -0.10 -2.83 5.38 30.65 0.16 -2.66 16 16 C -0.09 -2.42 2.79 -10.71 -0.03 -2.45 16 17 C -0.14 -2.68 9.20 71.98 0.66 -2.02 16 18 C -0.10 -3.07 5.38 30.65 0.16 -2.90 16 19 C 0.06 2.52 5.27 86.33 0.45 2.97 16 20 H 0.04 1.76 7.15 -2.39 -0.02 1.74 16 21 H 0.05 2.16 7.18 -2.39 -0.02 2.15 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 23 H 0.03 1.26 6.36 -2.39 -0.02 1.25 16 24 H 0.06 3.43 6.01 -2.39 -0.01 3.42 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.07 2.61 5.59 -2.39 -0.01 2.60 16 27 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.06 2.61 6.39 -2.39 -0.02 2.60 16 Total: -1.00 -60.07 278.34 3.33 -56.74 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.00 Total: 5.89 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 3.36 Total: -29.06 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.06 Total: -79.86 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -60.07 3.33 -56.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.520 kcal (2) G-P(sol) polarization free energy of solvation -60.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds