Wall clock time and date at job start Sun Mar 29 2020 21:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46765 * 2 1 4 4 H 1.09001 * 109.46976 * 182.26268 * 3 2 1 5 5 C 1.50701 * 109.47234 * 62.26446 * 3 2 1 6 6 H 1.07997 * 119.99983 * 244.33280 * 5 3 2 7 7 C 1.37878 * 119.99723 * 64.32788 * 5 3 2 8 8 N 1.31510 * 120.00308 * 8.36463 * 7 5 3 9 9 Si 1.86806 * 119.99889 * 188.08048 * 7 5 3 10 10 H 1.48505 * 109.46815 * 90.00520 * 9 7 5 11 11 H 1.48494 * 109.47327 * 210.00385 * 9 7 5 12 12 H 1.48503 * 109.47097 * 330.00718 * 9 7 5 13 13 N 1.46900 * 109.47108 * 302.26225 * 3 2 1 14 14 C 1.46844 * 111.00282 * 301.97477 * 13 3 2 15 15 C 1.53036 * 109.52375 * 174.16098 * 14 13 3 16 16 C 1.53116 * 109.27528 * 59.18187 * 15 14 13 17 17 C 1.53005 * 109.57524 * 182.40797 * 16 15 14 18 18 C 1.53119 * 109.16206 * 302.34086 * 16 15 14 19 19 C 1.46852 * 110.99581 * 177.76644 * 13 3 2 20 20 H 1.09000 * 109.47691 * 64.12264 * 1 2 3 21 21 H 1.09006 * 109.47074 * 184.12486 * 1 2 3 22 22 H 1.09007 * 109.46963 * 304.11921 * 1 2 3 23 23 H 1.09000 * 109.46601 * 240.00270 * 2 1 3 24 24 H 1.08998 * 109.47429 * 120.00365 * 2 1 3 25 25 H 0.97006 * 120.00290 * 4.40261 * 8 7 5 26 26 H 1.08999 * 109.46351 * 294.17975 * 14 13 3 27 27 H 1.08995 * 109.46265 * 54.14423 * 14 13 3 28 28 H 1.08994 * 109.50524 * 299.24099 * 15 14 13 29 29 H 1.09001 * 109.50242 * 179.11694 * 15 14 13 30 30 H 1.09001 * 109.52731 * 62.25128 * 16 15 14 31 31 H 1.08997 * 109.47304 * 179.71333 * 17 16 15 32 32 H 1.09002 * 109.46935 * 299.71679 * 17 16 15 33 33 H 1.09004 * 109.46598 * 59.71043 * 17 16 15 34 34 H 1.08997 * 109.50207 * 297.71892 * 18 16 15 35 35 H 1.09000 * 109.50150 * 177.59756 * 18 16 15 36 36 H 1.09002 * 109.46222 * 305.85663 * 19 13 3 37 37 H 1.09003 * 109.46138 * 65.82381 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1292 1.4429 -0.0406 5 6 1.5839 2.1366 1.2576 6 1 0.9036 2.9731 1.1963 7 6 2.0352 1.7035 2.4863 8 7 2.9857 0.7973 2.5557 9 14 1.3021 2.4098 4.0526 10 1 0.1374 1.5876 4.4684 11 1 2.3260 2.3971 5.1280 12 1 0.8598 3.8059 3.8064 13 7 1.5061 2.1506 -1.1712 14 6 1.8921 1.4743 -2.4161 15 6 1.2012 2.1520 -3.6017 16 6 1.6123 3.6261 -3.6511 17 6 0.8789 4.3246 -4.7979 18 6 1.2428 4.2956 -2.3245 19 6 1.9326 3.5558 -1.1760 20 1 -0.3634 0.4485 -0.9246 21 1 -0.3633 -1.0251 0.0739 22 1 -0.3633 0.5765 0.8508 23 1 1.8932 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.4138 0.4802 1.7449 26 1 2.9730 1.5352 -2.5424 27 1 1.5904 0.4280 -2.3696 28 1 0.1202 2.0794 -3.4830 29 1 1.5002 1.6596 -4.5271 30 1 2.6883 3.6992 -3.8088 31 1 1.1688 5.3749 -4.8284 32 1 1.1424 3.8474 -5.7418 33 1 -0.1971 4.2490 -4.6405 34 1 0.1624 4.2567 -2.1857 35 1 1.5716 5.3348 -2.3375 36 1 1.6602 4.0213 -0.2287 37 1 3.0134 3.6069 -1.3081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:24 Heat of formation + Delta-G solvation = -23.107319 kcal Electronic energy + Delta-G solvation = -15109.127005 eV Core-core repulsion = 12885.237982 eV Total energy + Delta-G solvation = -2223.889023 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.69752 -35.51782 -32.52050 -31.08115 -30.09238 -27.66719 -25.26360 -23.63478 -22.29562 -21.54174 -19.53435 -18.94236 -16.69150 -15.27657 -14.33125 -14.20105 -13.80414 -13.67598 -13.66269 -13.05220 -12.83767 -12.19642 -11.90665 -11.72197 -11.52249 -11.22234 -10.99041 -10.76605 -10.64624 -10.42581 -10.32131 -10.09042 -9.99553 -9.79345 -9.69367 -9.41315 -8.37052 -8.33625 -7.16288 -6.29747 -3.99338 3.46474 3.48351 3.64428 4.54397 4.88245 5.09901 5.16863 5.21486 5.40964 5.72340 5.75688 5.84877 5.90187 6.00207 6.05106 6.10601 6.23752 6.30592 6.37379 6.38692 6.44084 6.50962 6.55914 6.61600 6.82251 6.82906 6.94896 7.15036 7.24291 7.43864 7.54431 7.97921 8.12941 8.45537 8.65887 8.92556 9.69483 11.05976 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040318 B = 0.009362 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.306156 B = 2990.054481 C = 3337.109134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C 0.205 3.795 4 H -0.014 1.014 5 C -0.577 4.577 6 H 0.057 0.943 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.521 5.521 14 C 0.049 3.951 15 C -0.107 4.107 16 C -0.094 4.094 17 C -0.143 4.143 18 C -0.110 4.110 19 C 0.066 3.934 20 H 0.045 0.955 21 H 0.018 0.982 22 H 0.062 0.938 23 H 0.021 0.979 24 H 0.064 0.936 25 H 0.269 0.731 26 H 0.015 0.985 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 3.812 -10.273 11.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.153 4.153 3 C 0.098 3.902 4 H 0.003 0.997 5 C -0.616 4.616 6 H 0.075 0.925 7 C -0.184 4.184 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.214 1.214 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.246 5.246 14 C -0.079 4.079 15 C -0.145 4.145 16 C -0.113 4.113 17 C -0.200 4.200 18 C -0.148 4.148 19 C -0.063 4.063 20 H 0.064 0.936 21 H 0.037 0.963 22 H 0.081 0.919 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -3.724 3.690 -8.577 10.053 hybrid contribution 0.948 0.057 -1.754 1.995 sum -2.777 3.747 -10.331 11.335 Atomic orbital electron populations 1.21438 0.96304 0.97891 1.02088 1.21619 0.96435 0.98301 0.98934 1.19358 0.91756 0.90771 0.88302 0.99686 1.21860 1.30493 1.18077 0.91129 0.92513 1.25692 0.95497 0.95582 1.01588 1.70752 1.22719 1.29092 1.32494 0.83594 0.75890 0.75561 0.75491 1.21447 1.21315 1.21536 1.61922 1.59949 1.01297 1.01471 1.22094 0.96218 0.98687 0.90937 1.21610 1.01125 0.94664 0.97074 1.21182 0.99389 0.95541 0.95145 1.21810 1.00521 0.99856 0.97855 1.21677 1.01305 0.97807 0.94010 1.21925 0.95582 0.90097 0.98672 0.93577 0.96284 0.91861 0.96017 0.91709 0.91966 0.96648 0.91057 0.91514 0.92783 0.92153 0.93145 0.93265 0.92781 0.91571 0.92684 0.89565 0.96799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.52 37.16 0.35 -2.26 16 2 C -0.11 -2.70 4.91 -26.73 -0.13 -2.83 16 3 C 0.20 5.11 1.39 -68.86 -0.10 5.02 16 4 H -0.01 -0.40 7.48 -51.93 -0.39 -0.78 16 5 C -0.58 -15.69 6.46 -34.44 -0.22 -15.91 16 6 H 0.06 1.57 6.74 -52.49 -0.35 1.22 16 7 C 0.02 0.57 5.20 -17.82 -0.09 0.48 16 8 N -0.91 -27.11 12.82 55.43 0.71 -26.39 16 9 Si 1.07 25.12 29.91 -169.99 -5.08 20.03 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.52 -11.21 3.74 -228.07 -0.85 -12.06 16 14 C 0.05 0.92 5.14 -3.84 -0.02 0.90 16 15 C -0.11 -1.63 5.38 -26.65 -0.14 -1.78 16 16 C -0.09 -1.36 2.79 -90.50 -0.25 -1.61 16 17 C -0.14 -1.69 9.21 37.16 0.34 -1.34 16 18 C -0.11 -1.78 5.38 -26.65 -0.14 -1.92 16 19 C 0.07 1.32 5.23 -3.83 -0.02 1.30 16 20 H 0.05 0.96 7.65 -51.93 -0.40 0.56 16 21 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 1.50 7.15 -51.93 -0.37 1.13 16 23 H 0.02 0.47 6.37 -51.93 -0.33 0.13 16 24 H 0.06 1.69 6.33 -51.93 -0.33 1.36 16 25 H 0.27 8.01 6.22 -40.82 -0.25 7.76 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 1.34 6.00 -51.93 -0.31 1.02 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.91 6.23 -51.93 -0.32 1.59 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 278.13 15.07 4.19 4.19 Total: -1.00 -28.41 278.13 -7.97 -36.38 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.51 Total: -2.18 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -0.43 Total: -19.97 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -0.14 Total: -38.45 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.41 -7.97 -36.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.272 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds