Wall clock time and date at job start Sun Mar 29 2020 21:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46765 * 2 1 4 4 H 1.09001 * 109.46976 * 182.26268 * 3 2 1 5 5 C 1.50701 * 109.47234 * 62.26446 * 3 2 1 6 6 H 1.07997 * 119.99983 * 244.33280 * 5 3 2 7 7 C 1.37878 * 119.99723 * 64.32788 * 5 3 2 8 8 N 1.31510 * 120.00308 * 8.36463 * 7 5 3 9 9 Si 1.86806 * 119.99889 * 188.08048 * 7 5 3 10 10 H 1.48505 * 109.46815 * 90.00520 * 9 7 5 11 11 H 1.48494 * 109.47327 * 210.00385 * 9 7 5 12 12 H 1.48503 * 109.47097 * 330.00718 * 9 7 5 13 13 N 1.46900 * 109.47108 * 302.26225 * 3 2 1 14 14 C 1.46844 * 111.00282 * 301.97477 * 13 3 2 15 15 C 1.53036 * 109.52375 * 174.16098 * 14 13 3 16 16 C 1.53116 * 109.27528 * 59.18187 * 15 14 13 17 17 C 1.53005 * 109.57524 * 182.40797 * 16 15 14 18 18 C 1.53119 * 109.16206 * 302.34086 * 16 15 14 19 19 C 1.46852 * 110.99581 * 177.76644 * 13 3 2 20 20 H 1.09000 * 109.47691 * 64.12264 * 1 2 3 21 21 H 1.09006 * 109.47074 * 184.12486 * 1 2 3 22 22 H 1.09007 * 109.46963 * 304.11921 * 1 2 3 23 23 H 1.09000 * 109.46601 * 240.00270 * 2 1 3 24 24 H 1.08998 * 109.47429 * 120.00365 * 2 1 3 25 25 H 0.97006 * 120.00290 * 4.40261 * 8 7 5 26 26 H 1.08999 * 109.46351 * 294.17975 * 14 13 3 27 27 H 1.08995 * 109.46265 * 54.14423 * 14 13 3 28 28 H 1.08994 * 109.50524 * 299.24099 * 15 14 13 29 29 H 1.09001 * 109.50242 * 179.11694 * 15 14 13 30 30 H 1.09001 * 109.52731 * 62.25128 * 16 15 14 31 31 H 1.08997 * 109.47304 * 179.71333 * 17 16 15 32 32 H 1.09002 * 109.46935 * 299.71679 * 17 16 15 33 33 H 1.09004 * 109.46598 * 59.71043 * 17 16 15 34 34 H 1.08997 * 109.50207 * 297.71892 * 18 16 15 35 35 H 1.09000 * 109.50150 * 177.59756 * 18 16 15 36 36 H 1.09002 * 109.46222 * 305.85663 * 19 13 3 37 37 H 1.09003 * 109.46138 * 65.82381 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1292 1.4429 -0.0406 5 6 1.5839 2.1366 1.2576 6 1 0.9036 2.9731 1.1963 7 6 2.0352 1.7035 2.4863 8 7 2.9857 0.7973 2.5557 9 14 1.3021 2.4098 4.0526 10 1 0.1374 1.5876 4.4684 11 1 2.3260 2.3971 5.1280 12 1 0.8598 3.8059 3.8064 13 7 1.5061 2.1506 -1.1712 14 6 1.8921 1.4743 -2.4161 15 6 1.2012 2.1520 -3.6017 16 6 1.6123 3.6261 -3.6511 17 6 0.8789 4.3246 -4.7979 18 6 1.2428 4.2956 -2.3245 19 6 1.9326 3.5558 -1.1760 20 1 -0.3634 0.4485 -0.9246 21 1 -0.3633 -1.0251 0.0739 22 1 -0.3633 0.5765 0.8508 23 1 1.8932 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.4138 0.4802 1.7449 26 1 2.9730 1.5352 -2.5424 27 1 1.5904 0.4280 -2.3696 28 1 0.1202 2.0794 -3.4830 29 1 1.5002 1.6596 -4.5271 30 1 2.6883 3.6992 -3.8088 31 1 1.1688 5.3749 -4.8284 32 1 1.1424 3.8474 -5.7418 33 1 -0.1971 4.2490 -4.6405 34 1 0.1624 4.2567 -2.1857 35 1 1.5716 5.3348 -2.3375 36 1 1.6602 4.0213 -0.2287 37 1 3.0134 3.6069 -1.3081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:24 Heat of formation + Delta-G solvation = -39.298641 kcal Electronic energy + Delta-G solvation = -15109.829113 eV Core-core repulsion = 12885.237982 eV Total energy + Delta-G solvation = -2224.591132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26801 -37.19377 -34.32874 -32.85577 -31.61019 -29.14732 -27.09471 -25.47617 -23.84345 -23.01591 -21.24703 -20.46066 -18.72122 -17.03924 -15.85185 -15.83113 -15.55323 -15.40423 -14.90607 -14.68830 -14.39256 -13.90238 -13.45905 -13.17002 -13.01093 -12.74457 -12.63477 -12.56585 -12.10363 -12.08232 -11.94970 -11.90945 -11.64777 -11.44786 -11.18400 -10.94388 -10.48028 -10.37819 -8.98230 -8.54371 -6.23961 1.53488 1.61156 1.78340 2.58079 3.19240 3.28760 3.89160 3.92973 3.98780 4.31581 4.37925 4.45475 4.50019 4.55182 4.62047 4.70083 4.81302 4.85142 4.87515 4.98752 5.06081 5.08499 5.16281 5.21453 5.24689 5.27395 5.34466 5.41270 5.53233 5.57268 5.69808 5.98955 6.12197 6.51540 6.56041 6.80221 7.52768 8.81055 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040318 B = 0.009362 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.306156 B = 2990.054481 C = 3337.109134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C 0.207 3.793 4 H -0.056 1.056 5 C -0.577 4.577 6 H 0.049 0.951 7 C -0.028 4.028 8 N -0.938 5.938 9 Si 1.109 2.891 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.523 5.523 14 C 0.046 3.954 15 C -0.099 4.099 16 C -0.093 4.093 17 C -0.136 4.136 18 C -0.101 4.101 19 C 0.065 3.935 20 H 0.057 0.943 21 H 0.042 0.958 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.255 0.745 26 H 0.005 0.995 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.059 0.941 37 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 4.526 -11.889 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.100 3.900 4 H -0.039 1.039 5 C -0.615 4.615 6 H 0.067 0.933 7 C -0.226 4.226 8 N -0.576 5.576 9 Si 0.933 3.067 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.247 5.247 14 C -0.082 4.082 15 C -0.137 4.137 16 C -0.111 4.111 17 C -0.193 4.193 18 C -0.139 4.139 19 C -0.064 4.064 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.023 0.977 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -5.218 4.412 -10.226 12.298 hybrid contribution 1.457 -0.162 -1.301 1.960 sum -3.761 4.249 -11.527 12.848 Atomic orbital electron populations 1.21310 0.94500 0.99143 1.01574 1.21503 0.97863 0.97039 0.98339 1.19210 0.89330 0.92073 0.89403 1.03888 1.22067 1.29566 1.17647 0.92229 0.93267 1.27017 0.95258 0.95370 1.04981 1.70871 1.24220 1.30806 1.31720 0.83024 0.75572 0.75992 0.72157 1.20034 1.21419 1.19747 1.61928 1.59447 1.01814 1.01540 1.22217 0.96102 0.98925 0.90947 1.21590 1.00717 0.95139 0.96262 1.21179 0.99699 0.95082 0.95163 1.21733 1.00258 1.00265 0.97018 1.21618 1.00656 0.98387 0.93195 1.21940 0.95180 0.89805 0.99435 0.92391 0.93854 0.94182 0.94217 0.94649 0.93453 0.97692 0.91157 0.91325 0.90106 0.92431 0.92081 0.91708 0.92409 0.91583 0.90786 0.92289 0.98306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.61 9.52 71.98 0.69 -3.92 16 2 C -0.11 -5.21 4.91 30.60 0.15 -5.06 16 3 C 0.21 10.67 1.39 44.17 0.06 10.73 16 4 H -0.06 -3.30 7.48 -2.39 -0.02 -3.32 16 5 C -0.58 -32.15 6.46 25.60 0.17 -31.98 16 6 H 0.05 2.77 6.74 -2.91 -0.02 2.75 16 7 C -0.03 -1.61 5.20 84.66 0.44 -1.17 16 8 N -0.94 -57.41 12.82 21.45 0.28 -57.14 16 9 Si 1.11 50.88 29.91 68.60 2.05 52.93 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 N -0.52 -22.55 3.74 -875.49 -3.27 -25.82 16 14 C 0.05 1.68 5.14 86.33 0.44 2.12 16 15 C -0.10 -2.76 5.38 30.65 0.16 -2.59 16 16 C -0.09 -2.41 2.79 -10.71 -0.03 -2.44 16 17 C -0.14 -2.65 9.21 71.98 0.66 -1.98 16 18 C -0.10 -3.07 5.38 30.65 0.16 -2.91 16 19 C 0.06 2.64 5.23 86.33 0.45 3.09 16 20 H 0.06 2.31 7.65 -2.39 -0.02 2.29 16 21 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 22 H 0.04 1.87 7.15 -2.38 -0.02 1.86 16 23 H 0.04 1.72 6.37 -2.39 -0.02 1.70 16 24 H 0.03 1.88 6.33 -2.39 -0.02 1.87 16 25 H 0.26 15.96 6.22 -92.70 -0.58 15.38 16 26 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.07 2.54 6.00 -2.39 -0.01 2.53 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 2.68 6.23 -2.39 -0.01 2.67 16 37 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: -1.00 -62.58 278.13 3.61 -58.96 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.20 Total: 7.18 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 3.36 Total: -36.12 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -3.00 Total: -82.95 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.93 kcal Total: -62.58 3.61 -58.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.665 kcal (2) G-P(sol) polarization free energy of solvation -62.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds