Wall clock time and date at job start Sun Mar 29 2020 21:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47462 * 2 1 4 4 H 1.08998 * 109.46575 * 298.63130 * 3 2 1 5 5 C 1.50699 * 109.47139 * 58.63328 * 3 2 1 6 6 H 1.07996 * 119.99980 * 54.57317 * 5 3 2 7 7 C 1.37880 * 119.99636 * 234.57706 * 5 3 2 8 8 N 1.31512 * 119.99667 * 143.19891 * 7 5 3 9 9 Si 1.86792 * 120.00220 * 323.20232 * 7 5 3 10 10 H 1.48495 * 109.47587 * 84.17329 * 9 7 5 11 11 H 1.48506 * 109.47132 * 204.17625 * 9 7 5 12 12 H 1.48504 * 109.47357 * 324.17108 * 9 7 5 13 13 N 1.46894 * 109.47132 * 178.63504 * 3 2 1 14 14 C 1.46849 * 111.00117 * 303.42139 * 13 3 2 15 15 C 1.53035 * 109.52300 * 185.83918 * 14 13 3 16 16 C 1.53118 * 109.28197 * 300.82464 * 15 14 13 17 17 C 1.53114 * 109.16181 * 57.65230 * 16 15 14 18 18 C 1.46845 * 111.00218 * 67.63644 * 13 3 2 19 19 H 1.09006 * 109.46282 * 294.16410 * 18 13 3 20 20 C 1.52998 * 109.46491 * 54.14131 * 18 13 3 21 21 H 1.08998 * 109.47398 * 174.35678 * 1 2 3 22 22 H 1.09002 * 109.46772 * 294.35905 * 1 2 3 23 23 H 1.08999 * 109.47282 * 54.35374 * 1 2 3 24 24 H 1.09000 * 109.47042 * 239.99127 * 2 1 3 25 25 H 1.09003 * 109.46961 * 119.99983 * 2 1 3 26 26 H 0.97009 * 120.00282 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.46189 * 65.82779 * 14 13 3 28 28 H 1.09000 * 109.46486 * 305.85899 * 14 13 3 29 29 H 1.09003 * 109.50268 * 60.76972 * 15 14 13 30 30 H 1.09006 * 109.50334 * 180.87844 * 15 14 13 31 31 H 1.09004 * 109.52266 * 177.56292 * 16 15 14 32 32 H 1.09005 * 109.52297 * 297.75040 * 16 15 14 33 33 H 1.09004 * 109.50440 * 182.40352 * 17 16 15 34 34 H 1.09002 * 109.53495 * 62.30556 * 17 16 15 35 35 H 1.08999 * 109.47241 * 60.00261 * 20 18 13 36 36 H 1.09001 * 109.46986 * 180.02562 * 20 18 13 37 37 H 1.08994 * 109.46914 * 300.00299 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6969 1.9491 -0.9020 5 6 1.5103 2.1626 1.2132 6 1 1.6749 1.7532 2.1988 7 6 0.8154 3.3442 1.0646 8 7 -0.2049 3.6103 1.8506 9 14 1.3231 4.5670 -0.2531 10 1 0.7038 4.1853 -1.5477 11 1 0.8674 5.9270 0.1317 12 1 2.8017 4.5610 -0.3908 13 7 3.5086 1.4425 0.0330 14 6 4.0090 0.6966 1.1947 15 6 5.5303 0.8397 1.2779 16 6 6.1601 0.2995 -0.0090 17 6 5.5862 1.0605 -1.2073 18 6 4.0632 0.9109 -1.2185 19 1 3.8027 -0.1434 -1.3122 20 6 3.4835 1.6865 -2.4031 21 1 -0.3634 -1.0226 -0.1011 22 1 -0.3633 0.4239 0.9362 23 1 -0.3634 0.5989 -0.8351 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 -0.6936 4.4417 1.7464 27 1 3.7486 -0.3567 1.0896 28 1 3.5566 1.0934 2.1035 29 1 5.7909 1.8915 1.3970 30 1 5.9031 0.2731 2.1313 31 1 7.2406 0.4391 0.0278 32 1 5.9323 -0.7618 -0.1084 33 1 5.9989 0.6515 -2.1296 34 1 5.8476 2.1157 -1.1281 35 1 3.7436 2.7408 -2.3094 36 1 3.8947 1.2916 -3.3321 37 1 2.3989 1.5792 -2.4117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:29 Heat of formation + Delta-G solvation = -11.920545 kcal Electronic energy + Delta-G solvation = -15391.546056 eV Core-core repulsion = 13168.142128 eV Total energy + Delta-G solvation = -2223.403928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.85921 -34.71688 -32.27104 -31.79129 -30.60539 -26.95208 -26.19817 -23.70879 -22.44487 -21.01634 -19.91770 -18.15038 -16.78102 -15.25625 -14.50969 -14.30572 -13.90135 -13.62703 -13.34405 -12.85648 -12.78357 -12.54697 -11.79257 -11.60367 -11.37087 -11.29531 -10.92406 -10.81387 -10.71515 -10.51338 -10.27191 -10.22776 -9.97154 -9.93363 -9.54322 -9.38681 -9.06414 -8.02277 -7.03547 -6.20644 -3.92752 3.36059 3.47675 3.65786 4.53863 4.80497 5.19256 5.28388 5.33878 5.45346 5.67837 5.88665 5.96084 6.04968 6.08347 6.10773 6.15681 6.18831 6.33603 6.35379 6.39255 6.46540 6.58111 6.62695 6.71252 6.75785 6.78805 6.88063 6.96524 7.10802 7.30078 7.41894 7.79922 8.14546 8.40632 8.70162 9.02203 9.60565 10.91359 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.012711 C = 0.011829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.632633 B = 2202.294744 C = 2366.591757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.139 4.139 3 C 0.183 3.817 4 H 0.050 0.950 5 C -0.514 4.514 6 H 0.069 0.931 7 C 0.097 3.903 8 N -0.862 5.862 9 Si 0.846 3.154 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.255 1.255 13 N -0.525 5.525 14 C 0.064 3.936 15 C -0.118 4.118 16 C -0.117 4.117 17 C -0.110 4.110 18 C 0.072 3.928 19 H 0.028 0.972 20 C -0.147 4.147 21 H 0.024 0.976 22 H 0.074 0.926 23 H 0.039 0.961 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 -5.438 -5.262 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.179 4.179 3 C 0.078 3.922 4 H 0.068 0.932 5 C -0.551 4.551 6 H 0.087 0.913 7 C -0.110 4.110 8 N -0.496 5.496 9 Si 0.672 3.328 10 H -0.208 1.208 11 H -0.221 1.221 12 H -0.179 1.179 13 N -0.249 5.249 14 C -0.064 4.064 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.147 4.147 18 C -0.037 4.037 19 H 0.046 0.954 20 C -0.205 4.205 21 H 0.043 0.957 22 H 0.093 0.907 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.145 -4.817 -5.151 10.774 hybrid contribution -0.029 -0.048 -0.783 0.785 sum 8.117 -4.865 -5.934 11.170 Atomic orbital electron populations 1.21519 0.95979 0.98054 1.03095 1.22108 0.96681 1.00582 0.98529 1.19871 0.82335 0.91691 0.98314 0.93173 1.20472 1.34175 1.07707 0.92766 0.91328 1.24882 0.92718 0.98058 0.95299 1.70257 1.14335 1.24085 1.40878 0.87374 0.81578 0.81013 0.82802 1.20797 1.22088 1.17893 1.62927 1.10598 1.51991 0.99429 1.21878 0.93187 0.95018 0.96283 1.21627 0.96522 1.01262 0.96161 1.21543 0.98838 0.99161 0.95900 1.21612 0.95455 1.00791 0.96890 1.21576 0.93792 0.96026 0.92256 0.95377 1.21916 1.01213 1.00900 0.96450 0.95708 0.90730 0.94196 0.95430 0.93223 0.92723 0.96389 0.89826 0.91538 0.92810 0.92898 0.92963 0.92939 0.91574 0.92308 0.93454 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.53 37.16 0.35 -2.33 16 2 C -0.14 -2.94 4.77 -26.73 -0.13 -3.07 16 3 C 0.18 4.25 1.33 -68.87 -0.09 4.16 16 4 H 0.05 1.22 3.94 -51.93 -0.20 1.02 16 5 C -0.51 -13.83 6.75 -34.44 -0.23 -14.06 16 6 H 0.07 2.00 7.12 -52.49 -0.37 1.62 16 7 C 0.10 2.70 5.41 -17.82 -0.10 2.61 16 8 N -0.86 -25.17 13.96 55.43 0.77 -24.40 16 9 Si 0.85 21.31 27.51 -169.99 -4.68 16.63 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.52 -11.10 4.45 -220.14 -0.98 -12.08 16 14 C 0.06 1.25 4.62 -3.83 -0.02 1.24 16 15 C -0.12 -1.91 6.09 -26.65 -0.16 -2.07 16 16 C -0.12 -1.70 6.00 -26.61 -0.16 -1.86 16 17 C -0.11 -1.71 5.37 -26.65 -0.14 -1.85 16 18 C 0.07 1.31 2.06 -67.72 -0.14 1.17 16 19 H 0.03 0.52 6.83 -51.93 -0.35 0.16 16 20 C -0.15 -2.59 8.79 37.16 0.33 -2.26 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 1.75 7.39 -51.93 -0.38 1.37 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.54 6.80 -51.93 -0.35 0.18 16 25 H 0.05 1.05 6.41 -51.93 -0.33 0.72 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.02 0.35 6.56 -51.93 -0.34 0.00 16 28 H 0.08 1.81 6.47 -51.93 -0.34 1.47 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.11 6.16 -51.93 -0.32 0.79 16 LS Contribution 275.37 15.07 4.15 4.15 Total: -1.00 -27.91 275.37 -7.58 -35.49 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.36 Total: -1.47 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -0.49 Total: -18.33 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.21 Total: -36.47 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.68 Total: 16.63 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.91 -7.58 -35.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.572 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds