Wall clock time and date at job start Sun Mar 29 2020 21:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47413 * 2 1 4 4 H 1.08997 * 109.47270 * 305.00252 * 3 2 1 5 5 C 1.50701 * 109.47243 * 184.99896 * 3 2 1 6 6 H 1.07993 * 120.00288 * 240.00211 * 5 3 2 7 7 C 1.37874 * 119.99792 * 59.99748 * 5 3 2 8 8 N 1.31510 * 120.00450 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00055 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47158 * 90.00099 * 9 7 5 11 11 H 1.48496 * 109.47338 * 210.00380 * 9 7 5 12 12 H 1.48505 * 109.46970 * 330.00315 * 9 7 5 13 13 N 1.46907 * 109.47012 * 65.00112 * 3 2 1 14 14 C 1.46846 * 111.00107 * 64.65415 * 13 3 2 15 15 C 1.53032 * 109.52295 * 185.84258 * 14 13 3 16 16 C 1.53129 * 109.27386 * 300.81645 * 15 14 13 17 17 C 1.53119 * 109.15947 * 57.65762 * 16 15 14 18 18 C 1.46843 * 110.99626 * 188.86328 * 13 3 2 19 19 H 1.09000 * 109.46564 * 294.17318 * 18 13 3 20 20 C 1.53002 * 109.46810 * 54.14216 * 18 13 3 21 21 H 1.08998 * 109.47039 * 59.99871 * 1 2 3 22 22 H 1.09001 * 109.47277 * 300.00309 * 1 2 3 23 23 H 1.09000 * 109.47456 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47063 * 120.00117 * 2 1 3 25 25 H 1.09001 * 109.47277 * 239.99691 * 2 1 3 26 26 H 0.97002 * 120.00659 * 179.97438 * 8 7 5 27 27 H 1.09008 * 109.45975 * 305.85440 * 14 13 3 28 28 H 1.08997 * 109.46078 * 65.83253 * 14 13 3 29 29 H 1.08996 * 109.50705 * 60.75492 * 15 14 13 30 30 H 1.08993 * 109.50610 * 180.83818 * 15 14 13 31 31 H 1.08999 * 109.51905 * 177.56136 * 16 15 14 32 32 H 1.08992 * 109.52195 * 297.68448 * 16 15 14 33 33 H 1.09000 * 109.50643 * 62.28830 * 17 16 15 34 34 H 1.09002 * 109.50091 * 182.40551 * 17 16 15 35 35 H 1.08996 * 109.46647 * 53.09724 * 20 18 13 36 36 H 1.08994 * 109.47279 * 173.09513 * 20 18 13 37 37 H 1.08997 * 109.47088 * 293.10467 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0049 0.8810 -1.3818 10 1 6.5549 -0.3504 -0.7601 11 1 6.3830 0.9221 -2.8172 12 1 6.5570 2.0736 -0.6902 13 7 1.6514 2.0992 1.2553 14 6 2.3085 1.4661 2.4059 15 6 1.7713 2.0775 3.7018 16 6 2.0433 3.5844 3.7005 17 6 1.3892 4.2121 2.4666 18 6 1.9374 3.5387 1.2064 19 1 3.0150 3.6933 1.1516 20 6 1.2717 4.1492 -0.0285 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.8292 -0.0606 -2.9502 27 1 2.1036 0.3955 2.3972 28 1 3.3843 1.6305 2.3455 29 1 0.6977 1.9016 3.7695 30 1 2.2699 1.6178 4.5551 31 1 1.6239 4.0310 4.6021 32 1 3.1186 3.7604 3.6732 33 1 0.3096 4.0699 2.5149 34 1 1.6154 5.2780 2.4374 35 1 0.2132 3.8893 -0.0365 36 1 1.3793 5.2335 -0.0006 37 1 1.7482 3.7597 -0.9281 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:30 Heat of formation + Delta-G solvation = -17.326519 kcal Electronic energy + Delta-G solvation = -15379.180173 eV Core-core repulsion = 13155.541824 eV Total energy + Delta-G solvation = -2223.638349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.63411 -34.61292 -32.04460 -31.74865 -30.26307 -26.74158 -25.99939 -23.60352 -22.45727 -20.70825 -19.45391 -18.65144 -16.07430 -15.39020 -14.49935 -14.23607 -13.74906 -13.49724 -13.09008 -12.95957 -12.68143 -11.82026 -11.67162 -11.28631 -11.19098 -11.17658 -11.08574 -10.87083 -10.61059 -10.33507 -10.24832 -10.01365 -9.93689 -9.58327 -9.48757 -9.15928 -8.90434 -8.28393 -7.00134 -5.94103 -4.07321 3.27886 3.35303 3.38105 4.42368 5.04583 5.29222 5.40707 5.44159 5.50675 5.85844 6.06432 6.12415 6.20091 6.30004 6.32116 6.37915 6.45714 6.47361 6.53209 6.56308 6.69649 6.71426 6.81443 6.91947 7.00104 7.09301 7.18011 7.26576 7.44725 7.69787 7.82364 8.08480 8.24693 8.43144 8.58054 9.04171 9.59858 11.04282 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.012042 C = 0.010715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.329556 B = 2324.567668 C = 2612.494772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.209 3.791 4 H 0.047 0.953 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.529 5.529 14 C 0.061 3.939 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.110 4.110 18 C 0.089 3.911 19 H 0.039 0.961 20 C -0.140 4.140 21 H 0.038 0.962 22 H 0.047 0.953 23 H 0.023 0.977 24 H 0.031 0.969 25 H 0.091 0.909 26 H 0.260 0.740 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 4.089 7.070 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.103 3.897 4 H 0.064 0.936 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.254 5.254 14 C -0.067 4.067 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.020 4.020 19 H 0.057 0.943 20 C -0.198 4.198 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.935 3.944 6.936 8.896 hybrid contribution 2.055 0.006 -0.260 2.072 sum -1.880 3.951 6.676 7.982 Atomic orbital electron populations 1.21700 0.98940 0.98280 1.00537 1.21618 0.92201 0.99443 1.01786 1.19364 0.92896 0.91050 0.86420 0.93562 1.21760 0.93068 1.37696 1.05274 0.92749 1.24893 0.97581 0.95192 0.95752 1.69871 1.34634 1.38548 1.09437 0.86727 0.86563 0.78324 0.77172 1.20771 1.21245 1.20148 1.62411 1.57333 1.01094 1.04520 1.21884 0.96658 0.98516 0.89639 1.21632 1.01105 0.95093 0.97679 1.21534 1.00144 0.96324 0.97474 1.21649 1.00435 0.97977 0.94779 1.21320 0.97567 0.89715 0.93394 0.94326 1.21816 1.00769 0.98346 0.98823 0.94319 0.93365 0.95748 0.95021 0.89090 0.92990 0.91368 0.94741 0.92060 0.92974 0.93121 0.92787 0.91941 0.92940 0.92894 0.94007 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.80 37.16 0.36 -2.47 16 2 C -0.11 -2.67 5.14 -26.73 -0.14 -2.81 16 3 C 0.21 5.09 1.41 -68.86 -0.10 4.99 16 4 H 0.05 1.24 5.87 -51.93 -0.30 0.93 16 5 C -0.54 -14.35 7.22 -34.44 -0.25 -14.60 16 6 H 0.05 1.48 5.84 -52.49 -0.31 1.17 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.86 11.29 55.43 0.63 -24.23 16 9 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -11.13 3.90 -220.14 -0.86 -11.99 16 14 C 0.06 1.22 4.79 -3.84 -0.02 1.20 16 15 C -0.12 -1.89 6.09 -26.65 -0.16 -2.06 16 16 C -0.12 -1.78 6.00 -26.60 -0.16 -1.94 16 17 C -0.11 -1.78 5.37 -26.65 -0.14 -1.92 16 18 C 0.09 1.74 2.16 -67.72 -0.15 1.59 16 19 H 0.04 0.84 7.22 -51.93 -0.37 0.47 16 20 C -0.14 -2.61 8.54 37.16 0.32 -2.29 16 21 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.74 6.18 -51.92 -0.32 0.42 16 25 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.07 1.40 6.07 -51.92 -0.32 1.08 16 28 H 0.03 0.75 6.43 -51.93 -0.33 0.42 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.42 6.56 -51.93 -0.34 1.08 16 LS Contribution 275.45 15.07 4.15 4.15 Total: -1.00 -26.90 275.45 -8.00 -34.90 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.37 Total: -0.48 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -0.53 Total: -18.55 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.23 Total: -36.22 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.90 -8.00 -34.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.569 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds