Wall clock time and date at job start Sun Mar 29 2020 21:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47413 * 2 1 4 4 H 1.08997 * 109.47270 * 305.00252 * 3 2 1 5 5 C 1.50701 * 109.47243 * 184.99896 * 3 2 1 6 6 H 1.07993 * 120.00288 * 240.00211 * 5 3 2 7 7 C 1.37874 * 119.99792 * 59.99748 * 5 3 2 8 8 N 1.31510 * 120.00450 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00055 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47158 * 90.00099 * 9 7 5 11 11 H 1.48496 * 109.47338 * 210.00380 * 9 7 5 12 12 H 1.48505 * 109.46970 * 330.00315 * 9 7 5 13 13 N 1.46907 * 109.47012 * 65.00112 * 3 2 1 14 14 C 1.46846 * 111.00107 * 64.65415 * 13 3 2 15 15 C 1.53032 * 109.52295 * 185.84258 * 14 13 3 16 16 C 1.53129 * 109.27386 * 300.81645 * 15 14 13 17 17 C 1.53119 * 109.15947 * 57.65762 * 16 15 14 18 18 C 1.46843 * 110.99626 * 188.86328 * 13 3 2 19 19 H 1.09000 * 109.46564 * 294.17318 * 18 13 3 20 20 C 1.53002 * 109.46810 * 54.14216 * 18 13 3 21 21 H 1.08998 * 109.47039 * 59.99871 * 1 2 3 22 22 H 1.09001 * 109.47277 * 300.00309 * 1 2 3 23 23 H 1.09000 * 109.47456 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47063 * 120.00117 * 2 1 3 25 25 H 1.09001 * 109.47277 * 239.99691 * 2 1 3 26 26 H 0.97002 * 120.00659 * 179.97438 * 8 7 5 27 27 H 1.09008 * 109.45975 * 305.85440 * 14 13 3 28 28 H 1.08997 * 109.46078 * 65.83253 * 14 13 3 29 29 H 1.08996 * 109.50705 * 60.75492 * 15 14 13 30 30 H 1.08993 * 109.50610 * 180.83818 * 15 14 13 31 31 H 1.08999 * 109.51905 * 177.56136 * 16 15 14 32 32 H 1.08992 * 109.52195 * 297.68448 * 16 15 14 33 33 H 1.09000 * 109.50643 * 62.28830 * 17 16 15 34 34 H 1.09002 * 109.50091 * 182.40551 * 17 16 15 35 35 H 1.08996 * 109.46647 * 53.09724 * 20 18 13 36 36 H 1.08994 * 109.47279 * 173.09513 * 20 18 13 37 37 H 1.08997 * 109.47088 * 293.10467 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0049 0.8810 -1.3818 10 1 6.5549 -0.3504 -0.7601 11 1 6.3830 0.9221 -2.8172 12 1 6.5570 2.0736 -0.6902 13 7 1.6514 2.0992 1.2553 14 6 2.3085 1.4661 2.4059 15 6 1.7713 2.0775 3.7018 16 6 2.0433 3.5844 3.7005 17 6 1.3892 4.2121 2.4666 18 6 1.9374 3.5387 1.2064 19 1 3.0150 3.6933 1.1516 20 6 1.2717 4.1492 -0.0285 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.8292 -0.0606 -2.9502 27 1 2.1036 0.3955 2.3972 28 1 3.3843 1.6305 2.3455 29 1 0.6977 1.9016 3.7695 30 1 2.2699 1.6178 4.5551 31 1 1.6239 4.0310 4.6021 32 1 3.1186 3.7604 3.6732 33 1 0.3096 4.0699 2.5149 34 1 1.6154 5.2780 2.4374 35 1 0.2132 3.8893 -0.0365 36 1 1.3793 5.2335 -0.0006 37 1 1.7482 3.7597 -0.9281 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:30 Heat of formation + Delta-G solvation = -32.307151 kcal Electronic energy + Delta-G solvation = -15379.829782 eV Core-core repulsion = 13155.541824 eV Total energy + Delta-G solvation = -2224.287958 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.23874 -36.34300 -33.82362 -33.43925 -31.90851 -28.52843 -27.62399 -25.37592 -24.12607 -22.19802 -21.08343 -20.39985 -18.06144 -17.15394 -16.32244 -15.85240 -15.19813 -15.02241 -14.83326 -14.58105 -14.35539 -13.48142 -13.23935 -13.07559 -13.02303 -12.67575 -12.66248 -12.62563 -12.39853 -12.06000 -11.76801 -11.64765 -11.49118 -11.45490 -11.15740 -10.88741 -10.64658 -10.33510 -8.83045 -7.99834 -6.22479 1.34182 1.36419 1.44541 2.39721 3.16613 3.45861 4.07578 4.10643 4.18592 4.40951 4.59205 4.63373 4.69968 4.76854 4.79821 4.86835 4.93295 4.95470 5.11852 5.16850 5.16977 5.22975 5.32370 5.39796 5.40754 5.44312 5.48469 5.56688 5.61142 5.70981 5.86234 6.13481 6.28679 6.47177 6.81780 7.01674 7.47870 8.93427 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.012042 C = 0.010715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.329556 B = 2324.567668 C = 2612.494772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 C 0.215 3.785 4 H 0.019 0.981 5 C -0.546 4.546 6 H 0.043 0.957 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.940 3.060 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.524 5.524 14 C 0.062 3.938 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.103 4.103 18 C 0.084 3.916 19 H 0.008 0.992 20 C -0.133 4.133 21 H 0.032 0.968 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.260 0.740 27 H 0.057 0.943 28 H 0.008 0.992 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 4.945 8.766 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.147 4.147 3 C 0.108 3.892 4 H 0.037 0.963 5 C -0.585 4.585 6 H 0.061 0.939 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.248 5.248 14 C -0.067 4.067 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.025 4.025 19 H 0.026 0.974 20 C -0.190 4.190 21 H 0.051 0.949 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.537 4.806 8.644 10.881 hybrid contribution 2.245 -0.247 -0.787 2.391 sum -2.292 4.559 7.857 9.369 Atomic orbital electron populations 1.21549 0.96265 0.99659 1.00668 1.21475 0.94555 0.98627 1.00036 1.19133 0.91418 0.91351 0.87333 0.96278 1.21974 0.94481 1.37168 1.04871 0.93927 1.25553 1.01366 0.95175 0.95665 1.69991 1.35996 1.39212 1.09779 0.85835 0.82078 0.78220 0.77157 1.20343 1.20798 1.20107 1.62414 1.56934 1.02012 1.03439 1.21917 0.95210 0.98288 0.91264 1.21585 1.01539 0.95841 0.95754 1.21547 0.99874 0.95495 0.98377 1.21602 1.00693 0.98837 0.92943 1.21463 0.96115 0.89033 0.95926 0.97388 1.21738 1.00464 0.99935 0.96877 0.94869 0.92391 0.93757 0.95337 0.92151 0.93040 0.92507 0.97417 0.91199 0.90962 0.89830 0.93549 0.91084 0.90787 0.92326 0.91177 0.95068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.80 71.98 0.71 -4.32 16 2 C -0.11 -5.25 5.14 30.59 0.16 -5.10 16 3 C 0.21 10.74 1.41 44.17 0.06 10.80 16 4 H 0.02 1.07 5.87 -2.39 -0.01 1.06 16 5 C -0.55 -29.96 7.22 25.60 0.18 -29.78 16 6 H 0.04 2.39 5.84 -2.91 -0.02 2.38 16 7 C 0.02 1.22 5.29 84.65 0.45 1.67 16 8 N -0.91 -52.42 11.29 21.45 0.24 -52.18 16 9 Si 0.94 44.34 29.54 68.60 2.03 46.37 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.52 -22.00 3.90 -850.39 -3.32 -25.32 16 14 C 0.06 2.43 4.79 86.32 0.41 2.84 16 15 C -0.11 -3.24 6.09 30.65 0.19 -3.06 16 16 C -0.12 -3.12 6.00 30.68 0.18 -2.94 16 17 C -0.10 -3.01 5.37 30.65 0.16 -2.84 16 18 C 0.08 3.21 2.16 44.94 0.10 3.30 16 19 H 0.01 0.36 7.22 -2.39 -0.02 0.34 16 20 C -0.13 -4.89 8.54 71.98 0.61 -4.27 16 21 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.03 1.36 6.18 -2.38 -0.01 1.34 16 25 H 0.06 3.31 5.95 -2.39 -0.01 3.29 16 26 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.06 2.33 6.07 -2.38 -0.01 2.31 16 28 H 0.01 0.34 6.43 -2.39 -0.02 0.32 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.03 1.34 6.56 -2.39 -0.02 1.33 16 Total: -1.00 -58.74 275.45 3.18 -55.56 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.01 Total: 9.26 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 3.22 Total: -33.69 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -3.08 Total: -77.50 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -58.74 3.18 -55.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.254 kcal (2) G-P(sol) polarization free energy of solvation -58.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds