Wall clock time and date at job start Sun Mar 29 2020 21:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47235 * 2 1 4 4 H 1.09002 * 109.47806 * 53.75312 * 3 2 1 5 5 C 1.50705 * 109.47525 * 173.75255 * 3 2 1 6 6 H 1.07995 * 120.00584 * 114.79739 * 5 3 2 7 7 C 1.37887 * 119.99662 * 294.80844 * 5 3 2 8 8 N 1.31513 * 120.00045 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99680 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47615 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47083 * 119.99818 * 9 7 5 12 12 H 1.48499 * 109.47119 * 239.99836 * 9 7 5 13 13 N 1.46896 * 109.47543 * 293.75174 * 3 2 1 14 14 C 1.47999 * 111.00577 * 212.65901 * 13 3 2 15 15 C 1.50440 * 112.82963 * 191.34587 * 14 13 3 16 16 C 1.54304 * 108.50442 * 93.72317 * 15 14 13 17 17 C 1.45877 * 112.18485 * 281.46421 * 16 15 14 18 18 C 1.54313 * 112.18501 * 61.11981 * 17 16 15 19 19 C 1.47996 * 111.00018 * 83.93378 * 13 3 2 20 20 H 1.09001 * 109.46899 * 70.35181 * 1 2 3 21 21 H 1.09004 * 109.46927 * 190.35292 * 1 2 3 22 22 H 1.08995 * 109.46690 * 310.35404 * 1 2 3 23 23 H 1.09006 * 109.46764 * 119.99995 * 2 1 3 24 24 H 1.08999 * 109.47371 * 239.99578 * 2 1 3 25 25 H 0.96994 * 120.00124 * 180.02562 * 8 7 5 26 26 H 1.09002 * 108.81009 * 312.20538 * 14 13 3 27 27 H 1.09000 * 108.81363 * 70.47494 * 14 13 3 28 28 H 1.09002 * 109.63316 * 334.02022 * 15 14 13 29 29 H 1.09001 * 109.63429 * 213.42902 * 15 14 13 30 30 H 1.09000 * 108.94077 * 160.76734 * 16 15 14 31 31 H 1.09003 * 108.94148 * 42.16359 * 16 15 14 32 32 H 1.08995 * 108.93936 * 300.42277 * 17 16 15 33 33 H 1.09007 * 108.93929 * 181.81653 * 17 16 15 34 34 H 1.09006 * 109.63270 * 161.75666 * 18 17 16 35 35 H 1.09001 * 109.63288 * 41.16408 * 18 17 16 36 36 H 1.08998 * 108.81357 * 205.70598 * 19 13 3 37 37 H 1.08996 * 108.81432 * 323.97701 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5883 1.9876 0.8288 5 6 3.5391 1.4453 0.1546 6 1 4.1642 1.8075 -0.6481 7 6 4.1127 0.9852 1.3211 8 7 3.3516 0.5443 2.2988 9 14 5.9708 0.9881 1.5124 10 1 6.5949 1.5289 0.2782 11 1 6.3478 1.8370 2.6711 12 1 6.4472 -0.3999 1.7400 13 7 1.6774 2.0901 -1.2676 14 6 2.7027 3.0783 -1.6708 15 6 2.2526 3.9559 -2.8068 16 6 1.6424 5.2450 -2.2177 17 6 0.2822 5.0387 -1.7326 18 6 0.2196 3.9907 -0.6016 19 6 0.2965 2.6199 -1.2165 20 1 -0.3633 0.3456 -0.9679 21 1 -0.3633 -1.0110 0.1847 22 1 -0.3632 0.6654 0.7831 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 3.7551 0.2210 3.1194 26 1 2.9404 3.7079 -0.8132 27 1 3.6042 2.5459 -1.9737 28 1 1.5017 3.4325 -3.3986 29 1 3.1069 4.2089 -3.4348 30 1 1.6299 6.0150 -2.9891 31 1 2.2653 5.5854 -1.3905 32 1 -0.3417 4.7031 -2.5608 33 1 -0.1077 5.9858 -1.3593 34 1 -0.7186 4.0957 -0.0566 35 1 1.0594 4.1348 0.0781 36 1 -0.0998 2.6670 -2.2308 37 1 -0.3204 1.9374 -0.6319 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:26 Heat of formation + Delta-G solvation = -3.166227 kcal Electronic energy + Delta-G solvation = -15296.070122 eV Core-core repulsion = 13073.045810 eV Total energy + Delta-G solvation = -2223.024313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.76438 -35.18065 -32.26093 -31.73801 -30.67086 -27.49026 -25.15791 -23.81473 -22.78936 -20.35342 -19.51279 -18.65877 -16.31758 -15.75910 -14.66525 -14.56326 -13.82431 -13.56150 -13.27403 -12.75318 -12.55969 -11.99233 -11.93734 -11.59539 -11.54668 -11.25128 -10.87391 -10.71386 -10.55774 -10.33865 -10.29331 -10.12081 -9.87541 -9.72162 -9.45587 -9.05087 -8.56434 -8.39724 -6.87865 -5.99740 -4.03175 3.29819 3.38109 3.41741 4.43455 4.99663 5.11635 5.25274 5.33302 5.44021 5.70292 5.86007 6.00560 6.06548 6.13249 6.28035 6.31023 6.39104 6.43394 6.47607 6.52814 6.59494 6.60107 6.69743 6.83331 6.96676 7.03871 7.04581 7.23228 7.46412 7.65897 7.86366 7.94369 8.21112 8.42767 8.75749 9.06610 9.62516 11.08021 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.011566 C = 0.009331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.119351 B = 2420.226262 C = 3000.160042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C 0.219 3.781 4 H 0.007 0.993 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.546 5.546 14 C 0.077 3.923 15 C -0.123 4.123 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.148 4.148 19 C 0.044 3.956 20 H 0.049 0.951 21 H 0.029 0.971 22 H 0.040 0.960 23 H 0.081 0.919 24 H 0.039 0.961 25 H 0.259 0.741 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 5.559 -6.295 9.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.025 0.975 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.271 5.271 14 C -0.050 4.050 15 C -0.161 4.161 16 C -0.156 4.156 17 C -0.149 4.149 18 C -0.188 4.188 19 C -0.084 4.084 20 H 0.067 0.933 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.647 5.150 -6.457 9.477 hybrid contribution 0.987 0.618 0.918 1.483 sum -3.659 5.768 -5.540 8.795 Atomic orbital electron populations 1.22045 0.99769 0.98936 0.99886 1.21492 0.91461 0.99718 1.01456 1.19234 0.94770 0.90578 0.84180 0.97502 1.21613 0.91580 1.41885 1.00748 0.91305 1.24965 0.97863 0.95318 0.95930 1.69945 1.34544 1.42781 1.05611 0.86563 0.85998 0.77623 0.77970 1.19768 1.21220 1.21065 1.61944 0.99478 1.30305 1.35390 1.21594 0.95390 0.92826 0.95226 1.21541 1.00247 0.95568 0.98712 1.20587 0.97102 0.97878 1.00052 1.20512 0.97319 0.98696 0.98371 1.21943 1.01648 0.97105 0.98055 1.22237 0.92758 0.93895 0.99540 0.93264 0.95192 0.94090 0.90058 0.94172 0.93132 0.94881 0.91145 0.91530 0.92331 0.93244 0.92416 0.92662 0.93348 0.92667 0.91346 0.93011 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.29 37.16 0.31 -2.70 16 2 C -0.10 -2.47 5.49 -26.73 -0.15 -2.62 16 3 C 0.22 5.46 1.74 -68.87 -0.12 5.34 16 4 H 0.01 0.20 7.50 -51.93 -0.39 -0.19 16 5 C -0.52 -14.07 7.54 -34.43 -0.26 -14.33 16 6 H 0.07 1.84 5.20 -52.49 -0.27 1.57 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -25.41 11.70 55.43 0.65 -24.77 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.55 -11.72 4.53 -229.33 -1.04 -12.75 16 14 C 0.08 1.55 3.77 -4.50 -0.02 1.54 16 15 C -0.12 -1.98 5.63 -27.33 -0.15 -2.14 16 16 C -0.12 -1.74 5.30 -29.42 -0.16 -1.90 16 17 C -0.11 -1.61 5.30 -29.41 -0.16 -1.77 16 18 C -0.15 -2.52 5.48 -27.32 -0.15 -2.67 16 19 C 0.04 0.81 4.25 -4.50 -0.02 0.79 16 20 H 0.05 0.92 6.22 -51.93 -0.32 0.60 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.04 0.82 7.55 -51.93 -0.39 0.43 16 23 H 0.08 2.18 6.38 -51.93 -0.33 1.85 16 24 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.03 0.72 6.13 -51.93 -0.32 0.41 16 27 H 0.07 1.52 6.29 -51.93 -0.33 1.19 16 28 H 0.07 1.08 7.08 -51.93 -0.37 0.71 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.90 7.52 -51.93 -0.39 0.51 16 32 H 0.05 0.75 7.52 -51.93 -0.39 0.36 16 33 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.35 6.79 -51.93 -0.35 0.99 16 36 H 0.05 0.89 6.59 -51.93 -0.34 0.55 16 37 H 0.08 1.49 4.00 -51.93 -0.21 1.28 16 LS Contribution 267.08 15.07 4.02 4.02 Total: -1.00 -27.59 267.08 -8.42 -36.01 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.08 Total: 0.07 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -0.96 Total: -18.88 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.39 Total: -37.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.59 -8.42 -36.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.847 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds