Wall clock time and date at job start Sun Mar 29 2020 21:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47235 * 2 1 4 4 H 1.09002 * 109.47806 * 53.75312 * 3 2 1 5 5 C 1.50705 * 109.47525 * 173.75255 * 3 2 1 6 6 H 1.07995 * 120.00584 * 114.79739 * 5 3 2 7 7 C 1.37887 * 119.99662 * 294.80844 * 5 3 2 8 8 N 1.31513 * 120.00045 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99680 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47615 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47083 * 119.99818 * 9 7 5 12 12 H 1.48499 * 109.47119 * 239.99836 * 9 7 5 13 13 N 1.46896 * 109.47543 * 293.75174 * 3 2 1 14 14 C 1.47999 * 111.00577 * 212.65901 * 13 3 2 15 15 C 1.50440 * 112.82963 * 191.34587 * 14 13 3 16 16 C 1.54304 * 108.50442 * 93.72317 * 15 14 13 17 17 C 1.45877 * 112.18485 * 281.46421 * 16 15 14 18 18 C 1.54313 * 112.18501 * 61.11981 * 17 16 15 19 19 C 1.47996 * 111.00018 * 83.93378 * 13 3 2 20 20 H 1.09001 * 109.46899 * 70.35181 * 1 2 3 21 21 H 1.09004 * 109.46927 * 190.35292 * 1 2 3 22 22 H 1.08995 * 109.46690 * 310.35404 * 1 2 3 23 23 H 1.09006 * 109.46764 * 119.99995 * 2 1 3 24 24 H 1.08999 * 109.47371 * 239.99578 * 2 1 3 25 25 H 0.96994 * 120.00124 * 180.02562 * 8 7 5 26 26 H 1.09002 * 108.81009 * 312.20538 * 14 13 3 27 27 H 1.09000 * 108.81363 * 70.47494 * 14 13 3 28 28 H 1.09002 * 109.63316 * 334.02022 * 15 14 13 29 29 H 1.09001 * 109.63429 * 213.42902 * 15 14 13 30 30 H 1.09000 * 108.94077 * 160.76734 * 16 15 14 31 31 H 1.09003 * 108.94148 * 42.16359 * 16 15 14 32 32 H 1.08995 * 108.93936 * 300.42277 * 17 16 15 33 33 H 1.09007 * 108.93929 * 181.81653 * 17 16 15 34 34 H 1.09006 * 109.63270 * 161.75666 * 18 17 16 35 35 H 1.09001 * 109.63288 * 41.16408 * 18 17 16 36 36 H 1.08998 * 108.81357 * 205.70598 * 19 13 3 37 37 H 1.08996 * 108.81432 * 323.97701 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5883 1.9876 0.8288 5 6 3.5391 1.4453 0.1546 6 1 4.1642 1.8075 -0.6481 7 6 4.1127 0.9852 1.3211 8 7 3.3516 0.5443 2.2988 9 14 5.9708 0.9881 1.5124 10 1 6.5949 1.5289 0.2782 11 1 6.3478 1.8370 2.6711 12 1 6.4472 -0.3999 1.7400 13 7 1.6774 2.0901 -1.2676 14 6 2.7027 3.0783 -1.6708 15 6 2.2526 3.9559 -2.8068 16 6 1.6424 5.2450 -2.2177 17 6 0.2822 5.0387 -1.7326 18 6 0.2196 3.9907 -0.6016 19 6 0.2965 2.6199 -1.2165 20 1 -0.3633 0.3456 -0.9679 21 1 -0.3633 -1.0110 0.1847 22 1 -0.3632 0.6654 0.7831 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 3.7551 0.2210 3.1194 26 1 2.9404 3.7079 -0.8132 27 1 3.6042 2.5459 -1.9737 28 1 1.5017 3.4325 -3.3986 29 1 3.1069 4.2089 -3.4348 30 1 1.6299 6.0150 -2.9891 31 1 2.2653 5.5854 -1.3905 32 1 -0.3417 4.7031 -2.5608 33 1 -0.1077 5.9858 -1.3593 34 1 -0.7186 4.0957 -0.0566 35 1 1.0594 4.1348 0.0781 36 1 -0.0998 2.6670 -2.2308 37 1 -0.3204 1.9374 -0.6319 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:25 Heat of formation + Delta-G solvation = -19.574373 kcal Electronic energy + Delta-G solvation = -15296.781633 eV Core-core repulsion = 13073.045810 eV Total energy + Delta-G solvation = -2223.735823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.29246 -36.84387 -34.20457 -33.26084 -32.30709 -29.28042 -26.84233 -25.33390 -24.59397 -21.92700 -21.01699 -20.33175 -18.28839 -17.41879 -16.37146 -16.19976 -15.45819 -15.14434 -14.69868 -14.44908 -14.09742 -13.74521 -13.50771 -13.22803 -13.05332 -13.00945 -12.76185 -12.43564 -12.34815 -11.96878 -11.78238 -11.57240 -11.50361 -11.32627 -11.06139 -10.73936 -10.51346 -10.44528 -8.64670 -8.11486 -6.21134 1.37531 1.39781 1.50680 2.41588 3.18322 3.40936 3.87421 3.97911 4.16333 4.35081 4.50426 4.57991 4.62560 4.65064 4.74022 4.79873 4.87255 4.93059 5.06509 5.16960 5.20176 5.24178 5.28134 5.32355 5.37581 5.45411 5.49052 5.54823 5.60374 5.69596 5.81855 5.95302 6.27360 6.48862 6.93522 7.01461 7.48776 8.95813 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.011566 C = 0.009331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.119351 B = 2420.226262 C = 3000.160042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 C 0.226 3.774 4 H -0.031 1.031 5 C -0.535 4.535 6 H 0.067 0.933 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.550 5.550 14 C 0.083 3.917 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.107 4.107 18 C -0.146 4.146 19 C 0.041 3.959 20 H 0.067 0.933 21 H 0.048 0.952 22 H 0.035 0.965 23 H 0.049 0.951 24 H 0.033 0.967 25 H 0.259 0.741 26 H 0.006 0.994 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 6.513 -7.979 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 C 0.119 3.881 4 H -0.014 1.014 5 C -0.573 4.573 6 H 0.085 0.915 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.206 1.206 13 N -0.275 5.275 14 C -0.044 4.044 15 C -0.153 4.153 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.185 4.185 19 C -0.086 4.086 20 H 0.086 0.914 21 H 0.067 0.933 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.311 6.113 -8.157 11.494 hybrid contribution 1.173 0.328 1.437 1.884 sum -4.138 6.441 -6.720 10.187 Atomic orbital electron populations 1.21896 0.96555 1.00121 1.00768 1.21334 0.94360 0.98588 0.99458 1.18992 0.93499 0.90977 0.84606 1.01358 1.21963 0.93049 1.41481 1.00802 0.91531 1.25719 1.02110 0.95136 0.95745 1.70072 1.36212 1.43594 1.05992 0.85596 0.80955 0.77650 0.78005 1.19078 1.20932 1.20644 1.61902 1.01237 1.31362 1.33032 1.21539 0.94687 0.92413 0.95809 1.21486 1.01242 0.95439 0.97119 1.20571 0.96793 0.97678 1.00350 1.20495 0.97582 0.98630 0.97752 1.21886 1.00795 0.97286 0.98566 1.22324 0.90709 0.94601 1.00951 0.91402 0.93346 0.94605 0.93279 0.94784 0.93170 0.97590 0.93300 0.90821 0.90570 0.90157 0.94033 0.90814 0.91457 0.91236 0.95044 0.90635 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 8.29 71.98 0.60 -4.81 16 2 C -0.10 -4.84 5.49 30.59 0.17 -4.68 16 3 C 0.23 11.66 1.74 44.17 0.08 11.73 16 4 H -0.03 -1.82 7.50 -2.39 -0.02 -1.83 16 5 C -0.53 -29.85 7.54 25.60 0.19 -29.66 16 6 H 0.07 3.67 5.20 -2.91 -0.02 3.66 16 7 C 0.01 0.66 5.29 84.66 0.45 1.10 16 8 N -0.92 -54.14 11.70 21.45 0.25 -53.89 16 9 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.55 -23.65 4.53 -879.45 -3.98 -27.63 16 14 C 0.08 3.37 3.77 85.26 0.32 3.69 16 15 C -0.12 -3.47 5.63 30.21 0.17 -3.30 16 16 C -0.12 -3.10 5.30 28.85 0.15 -2.94 16 17 C -0.11 -2.76 5.30 28.86 0.15 -2.60 16 18 C -0.15 -4.80 5.48 30.21 0.17 -4.64 16 19 C 0.04 1.47 4.25 85.26 0.36 1.84 16 20 H 0.07 2.42 6.22 -2.39 -0.01 2.41 16 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.03 1.43 7.55 -2.39 -0.02 1.41 16 23 H 0.05 2.71 6.38 -2.38 -0.02 2.70 16 24 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.01 0.26 6.13 -2.39 -0.01 0.25 16 27 H 0.05 2.15 6.29 -2.39 -0.02 2.13 16 28 H 0.07 2.14 7.08 -2.39 -0.02 2.12 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.24 7.52 -2.39 -0.02 1.22 16 32 H 0.07 1.67 7.52 -2.39 -0.02 1.65 16 33 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.03 1.26 6.79 -2.39 -0.02 1.24 16 36 H 0.08 2.35 6.59 -2.39 -0.02 2.33 16 37 H 0.07 2.71 4.00 -2.39 -0.01 2.70 16 Total: -1.00 -60.93 267.08 2.13 -58.80 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.03 Total: 10.41 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 2.81 Total: -34.26 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -3.73 Total: -81.52 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -60.93 2.13 -58.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.223 kcal (2) G-P(sol) polarization free energy of solvation -60.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds