Wall clock time and date at job start Sun Mar 29 2020 21:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47015 * 2 1 4 4 H 1.08998 * 109.47306 * 301.83306 * 3 2 1 5 5 C 1.50709 * 109.46738 * 181.83845 * 3 2 1 6 6 H 1.08002 * 119.99801 * 305.49545 * 5 3 2 7 7 C 1.37872 * 119.99687 * 125.49553 * 5 3 2 8 8 N 1.31521 * 119.99813 * 172.53407 * 7 5 3 9 9 Si 1.86794 * 120.00532 * 352.53977 * 7 5 3 10 10 H 1.48500 * 109.47579 * 92.34010 * 9 7 5 11 11 H 1.48501 * 109.47399 * 212.33985 * 9 7 5 12 12 H 1.48504 * 109.46974 * 332.33826 * 9 7 5 13 13 N 1.46893 * 109.47063 * 61.84194 * 3 2 1 14 14 C 1.48003 * 111.00478 * 63.66402 * 13 3 2 15 15 C 1.50446 * 112.83298 * 84.83537 * 14 13 3 16 16 C 1.54309 * 108.50092 * 93.72855 * 15 14 13 17 17 C 1.45890 * 112.18074 * 281.47972 * 16 15 14 18 18 C 1.54304 * 112.19067 * 61.11429 * 17 16 15 19 19 C 1.48006 * 111.00079 * 192.38521 * 13 3 2 20 20 H 1.08999 * 109.47106 * 299.99862 * 1 2 3 21 21 H 1.09005 * 109.47137 * 59.99508 * 1 2 3 22 22 H 1.09002 * 109.47439 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47106 * 240.00138 * 2 1 3 24 24 H 1.08996 * 109.47266 * 120.00323 * 2 1 3 25 25 H 0.96994 * 119.99973 * 179.97438 * 8 7 5 26 26 H 1.08995 * 108.80653 * 323.96990 * 14 13 3 27 27 H 1.09003 * 108.81036 * 205.70048 * 14 13 3 28 28 H 1.09004 * 109.63128 * 334.02212 * 15 14 13 29 29 H 1.09000 * 109.63080 * 213.43386 * 15 14 13 30 30 H 1.09001 * 108.94224 * 42.17153 * 16 15 14 31 31 H 1.08999 * 108.93795 * 160.78390 * 16 15 14 32 32 H 1.08995 * 108.93659 * 181.82018 * 17 16 15 33 33 H 1.09005 * 108.93372 * 300.41932 * 17 16 15 34 34 H 1.09004 * 109.63157 * 41.15778 * 18 17 16 35 35 H 1.09004 * 109.63211 * 161.74975 * 18 17 16 36 36 H 1.08998 * 108.81120 * 70.48123 * 19 13 3 37 37 H 1.09004 * 108.80946 * 312.20767 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6500 1.9658 -0.8731 5 6 3.5463 1.4427 -0.0456 6 1 4.1090 0.8915 0.6934 7 6 4.2061 2.1464 -1.0307 8 7 5.5148 2.2690 -0.9869 9 14 3.2412 2.9260 -2.4273 10 1 2.8993 4.3266 -2.0716 11 1 4.0642 2.9161 -3.6634 12 1 1.9931 2.1549 -2.6575 13 7 1.5870 2.1220 1.2210 14 6 2.1691 1.4908 2.4265 15 6 3.5406 2.0147 2.7553 16 6 3.3939 3.1674 3.7706 17 6 2.9826 4.4136 3.1335 18 6 1.6096 4.2884 2.4405 19 6 1.8013 3.5833 1.1255 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 5.9790 2.7638 -1.6801 26 1 2.2336 0.4150 2.2634 27 1 1.5094 1.6767 3.2740 28 1 4.0186 2.3843 1.8481 29 1 4.1425 1.2172 3.1909 30 1 2.6496 2.8891 4.5168 31 1 4.3507 3.3237 4.2689 32 1 2.9270 5.1962 3.8901 33 1 3.7294 4.6945 2.3908 34 1 0.9327 3.7111 3.0704 35 1 1.1952 5.2815 2.2666 36 1 1.0992 3.9949 0.4003 37 1 2.8161 3.7674 0.7725 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:27 Heat of formation + Delta-G solvation = -10.007744 kcal Electronic energy + Delta-G solvation = -15576.619994 eV Core-core repulsion = 13353.299011 eV Total energy + Delta-G solvation = -2223.320983 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.72677 -35.12681 -32.16534 -31.49030 -31.06752 -27.47644 -25.18761 -24.16819 -22.50680 -20.08910 -19.67934 -18.21018 -17.02655 -15.71480 -14.84022 -14.32415 -14.06259 -13.25182 -13.04214 -12.70152 -12.42856 -12.25273 -12.00962 -11.86157 -11.51960 -11.34696 -11.02289 -10.84504 -10.40762 -10.11077 -10.09137 -9.90051 -9.80903 -9.66561 -9.64135 -9.30873 -8.84730 -8.50599 -6.91255 -6.12866 -4.10284 3.24470 3.34156 3.36135 4.37376 4.96415 5.29018 5.37821 5.43574 5.61983 5.85136 5.98425 6.08641 6.13056 6.16010 6.25618 6.29869 6.39351 6.46053 6.56445 6.68692 6.72684 6.77282 6.78227 6.81847 6.88277 6.99976 7.03698 7.07090 7.26496 7.28990 7.58988 7.73134 8.25895 8.39708 8.56281 8.93199 9.52036 10.99433 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.015738 C = 0.012509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.282317 B = 1778.673975 C = 2237.792509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.166 3.834 4 H 0.046 0.954 5 C -0.532 4.532 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.867 3.133 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.543 5.543 14 C 0.079 3.921 15 C -0.159 4.159 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.114 4.114 19 C 0.060 3.940 20 H 0.060 0.940 21 H 0.039 0.961 22 H 0.031 0.969 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.263 0.737 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.115 0.885 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 1.560 5.336 8.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C 0.060 3.940 4 H 0.064 0.936 5 C -0.571 4.571 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.695 3.305 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.268 5.268 14 C -0.049 4.049 15 C -0.197 4.197 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.067 4.067 20 H 0.079 0.921 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.134 0.866 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.137 1.582 5.276 9.015 hybrid contribution 0.618 0.594 -0.888 1.235 sum -6.519 2.176 4.388 8.154 Atomic orbital electron populations 1.21739 0.97743 0.99023 1.01525 1.21613 0.93577 0.98595 1.00542 1.19851 0.94032 0.91023 0.89081 0.93635 1.21663 0.90503 1.30958 1.13967 0.90159 1.25095 0.94645 0.95524 0.97446 1.69929 1.07541 1.41636 1.34253 0.87006 0.80538 0.80149 0.82803 1.20234 1.21635 1.18739 1.62457 1.58908 1.01792 1.03610 1.21515 0.92831 0.98431 0.92139 1.22295 0.99288 0.96896 1.01231 1.20541 0.99732 0.96419 0.98359 1.20561 0.97647 0.97501 0.99630 1.21377 0.96823 0.99381 0.97626 1.21555 1.00650 0.88816 0.95711 0.92117 0.94200 0.95031 0.92980 0.92967 0.92757 0.92167 0.93894 0.86648 0.93527 0.93524 0.93587 0.93629 0.92093 0.91549 0.92585 0.93426 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.77 37.16 0.36 -2.16 16 2 C -0.11 -2.16 5.26 -26.73 -0.14 -2.30 16 3 C 0.17 3.80 1.71 -68.86 -0.12 3.68 16 4 H 0.05 1.10 4.42 -51.93 -0.23 0.87 16 5 C -0.53 -13.89 5.41 -34.44 -0.19 -14.07 16 6 H 0.08 2.28 6.55 -52.49 -0.34 1.94 16 7 C 0.08 2.08 5.23 -17.82 -0.09 1.99 16 8 N -0.90 -26.25 13.96 55.43 0.77 -25.48 16 9 Si 0.87 21.12 27.28 -169.99 -4.64 16.48 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.21 6.35 56.52 0.36 -5.85 16 13 N -0.54 -11.23 3.99 -229.30 -0.91 -12.15 16 14 C 0.08 1.53 4.67 -4.49 -0.02 1.51 16 15 C -0.16 -3.16 4.47 -27.32 -0.12 -3.29 16 16 C -0.11 -1.92 5.30 -29.41 -0.16 -2.07 16 17 C -0.12 -1.93 5.30 -29.41 -0.16 -2.09 16 18 C -0.11 -1.92 5.63 -27.33 -0.15 -2.07 16 19 C 0.06 1.22 4.88 -4.49 -0.02 1.20 16 20 H 0.06 1.07 7.66 -51.93 -0.40 0.67 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 1.06 6.05 -51.93 -0.31 0.74 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.06 1.20 5.63 -51.93 -0.29 0.91 16 27 H 0.04 0.77 6.59 -51.93 -0.34 0.43 16 28 H 0.12 2.79 4.48 -51.93 -0.23 2.56 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.73 7.52 -51.93 -0.39 0.34 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.13 7.52 -51.93 -0.39 0.74 16 34 H 0.07 1.09 7.08 -51.93 -0.37 0.72 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 1.16 5.53 -51.93 -0.29 0.87 16 LS Contribution 265.89 15.07 4.01 4.01 Total: -1.00 -27.13 265.89 -7.72 -34.85 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.15 Total: 1.96 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -0.81 Total: -19.67 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.14 Total: -37.62 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.64 Total: 16.48 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.13 -7.72 -34.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.843 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds