Wall clock time and date at job start Sun Mar 29 2020 21:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47015 * 2 1 4 4 H 1.08998 * 109.47306 * 301.83306 * 3 2 1 5 5 C 1.50709 * 109.46738 * 181.83845 * 3 2 1 6 6 H 1.08002 * 119.99801 * 305.49545 * 5 3 2 7 7 C 1.37872 * 119.99687 * 125.49553 * 5 3 2 8 8 N 1.31521 * 119.99813 * 172.53407 * 7 5 3 9 9 Si 1.86794 * 120.00532 * 352.53977 * 7 5 3 10 10 H 1.48500 * 109.47579 * 92.34010 * 9 7 5 11 11 H 1.48501 * 109.47399 * 212.33985 * 9 7 5 12 12 H 1.48504 * 109.46974 * 332.33826 * 9 7 5 13 13 N 1.46893 * 109.47063 * 61.84194 * 3 2 1 14 14 C 1.48003 * 111.00478 * 63.66402 * 13 3 2 15 15 C 1.50446 * 112.83298 * 84.83537 * 14 13 3 16 16 C 1.54309 * 108.50092 * 93.72855 * 15 14 13 17 17 C 1.45890 * 112.18074 * 281.47972 * 16 15 14 18 18 C 1.54304 * 112.19067 * 61.11429 * 17 16 15 19 19 C 1.48006 * 111.00079 * 192.38521 * 13 3 2 20 20 H 1.08999 * 109.47106 * 299.99862 * 1 2 3 21 21 H 1.09005 * 109.47137 * 59.99508 * 1 2 3 22 22 H 1.09002 * 109.47439 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47106 * 240.00138 * 2 1 3 24 24 H 1.08996 * 109.47266 * 120.00323 * 2 1 3 25 25 H 0.96994 * 119.99973 * 179.97438 * 8 7 5 26 26 H 1.08995 * 108.80653 * 323.96990 * 14 13 3 27 27 H 1.09003 * 108.81036 * 205.70048 * 14 13 3 28 28 H 1.09004 * 109.63128 * 334.02212 * 15 14 13 29 29 H 1.09000 * 109.63080 * 213.43386 * 15 14 13 30 30 H 1.09001 * 108.94224 * 42.17153 * 16 15 14 31 31 H 1.08999 * 108.93795 * 160.78390 * 16 15 14 32 32 H 1.08995 * 108.93659 * 181.82018 * 17 16 15 33 33 H 1.09005 * 108.93372 * 300.41932 * 17 16 15 34 34 H 1.09004 * 109.63157 * 41.15778 * 18 17 16 35 35 H 1.09004 * 109.63211 * 161.74975 * 18 17 16 36 36 H 1.08998 * 108.81120 * 70.48123 * 19 13 3 37 37 H 1.09004 * 108.80946 * 312.20767 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6500 1.9658 -0.8731 5 6 3.5463 1.4427 -0.0456 6 1 4.1090 0.8915 0.6934 7 6 4.2061 2.1464 -1.0307 8 7 5.5148 2.2690 -0.9869 9 14 3.2412 2.9260 -2.4273 10 1 2.8993 4.3266 -2.0716 11 1 4.0642 2.9161 -3.6634 12 1 1.9931 2.1549 -2.6575 13 7 1.5870 2.1220 1.2210 14 6 2.1691 1.4908 2.4265 15 6 3.5406 2.0147 2.7553 16 6 3.3939 3.1674 3.7706 17 6 2.9826 4.4136 3.1335 18 6 1.6096 4.2884 2.4405 19 6 1.8013 3.5833 1.1255 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 5.9790 2.7638 -1.6801 26 1 2.2336 0.4150 2.2634 27 1 1.5094 1.6767 3.2740 28 1 4.0186 2.3843 1.8481 29 1 4.1425 1.2172 3.1909 30 1 2.6496 2.8891 4.5168 31 1 4.3507 3.3237 4.2689 32 1 2.9270 5.1962 3.8901 33 1 3.7294 4.6945 2.3908 34 1 0.9327 3.7111 3.0704 35 1 1.1952 5.2815 2.2666 36 1 1.0992 3.9949 0.4003 37 1 2.8161 3.7674 0.7725 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:27 Heat of formation + Delta-G solvation = -26.272872 kcal Electronic energy + Delta-G solvation = -15577.325303 eV Core-core repulsion = 13353.299011 eV Total energy + Delta-G solvation = -2224.026292 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33467 -36.73842 -34.22519 -33.03848 -32.58835 -29.28291 -26.87545 -25.70202 -24.23418 -21.73018 -21.14326 -19.90657 -19.06127 -17.35759 -16.43900 -16.19442 -15.61641 -14.91092 -14.69955 -14.31081 -14.08909 -13.88810 -13.67988 -13.50418 -13.13068 -12.99699 -12.67367 -12.55200 -12.04881 -11.84150 -11.61985 -11.55907 -11.44938 -11.33522 -11.21635 -10.82323 -10.73218 -10.56105 -8.67336 -8.26482 -6.24460 1.28343 1.32403 1.40259 2.32849 3.05676 3.48192 3.96320 4.02042 4.14790 4.35351 4.46552 4.58033 4.62921 4.66486 4.76437 4.87552 4.88637 4.94090 5.04524 5.13888 5.17009 5.28975 5.31044 5.33046 5.40032 5.43873 5.50387 5.53375 5.57918 5.65964 5.75115 5.94221 6.28928 6.58803 6.75107 6.81193 7.39857 8.89423 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.015738 C = 0.012509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.282317 B = 1778.673975 C = 2237.792509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 C 0.167 3.833 4 H 0.037 0.963 5 C -0.513 4.513 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.944 5.944 9 Si 0.919 3.081 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.247 1.247 13 N -0.534 5.534 14 C 0.081 3.919 15 C -0.155 4.155 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.107 4.107 19 C 0.060 3.940 20 H 0.063 0.937 21 H 0.040 0.960 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.260 0.740 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 2.014 6.431 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.143 4.143 3 C 0.060 3.940 4 H 0.055 0.945 5 C -0.552 4.552 6 H 0.064 0.936 7 C -0.175 4.175 8 N -0.585 5.585 9 Si 0.745 3.255 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.171 1.171 13 N -0.258 5.258 14 C -0.047 4.047 15 C -0.194 4.194 16 C -0.145 4.145 17 C -0.152 4.152 18 C -0.144 4.144 19 C -0.068 4.068 20 H 0.082 0.918 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -9.757 2.029 6.382 11.834 hybrid contribution 1.465 0.410 -1.146 1.905 sum -8.291 2.439 5.236 10.105 Atomic orbital electron populations 1.21621 0.94880 1.00748 1.01681 1.21550 0.96067 0.96609 1.00110 1.19824 0.91533 0.92765 0.89921 0.94528 1.21819 0.92369 1.28883 1.12154 0.93596 1.25762 0.95245 0.96603 0.99937 1.70066 1.09287 1.43782 1.35388 0.86156 0.79748 0.79682 0.79895 1.19730 1.21921 1.17122 1.62479 1.58179 1.02131 1.03029 1.21568 0.92896 0.97820 0.92432 1.22130 0.99172 0.97971 1.00150 1.20500 1.00970 0.95221 0.97832 1.20544 0.96815 0.98200 0.99659 1.21355 0.97096 1.00369 0.95615 1.21642 0.98383 0.88743 0.98032 0.91803 0.94121 0.92576 0.93942 0.93032 0.93055 0.92959 0.91059 0.91403 0.94070 0.90911 0.93078 0.90438 0.95067 0.90175 0.90213 0.93134 0.97046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.77 71.98 0.70 -3.57 16 2 C -0.11 -4.19 5.26 30.59 0.16 -4.03 16 3 C 0.17 7.54 1.71 44.17 0.08 7.62 16 4 H 0.04 1.73 4.42 -2.39 -0.01 1.72 16 5 C -0.51 -27.59 5.41 25.60 0.14 -27.45 16 6 H 0.05 2.74 6.55 -2.91 -0.02 2.73 16 7 C 0.02 1.27 5.23 84.65 0.44 1.71 16 8 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 9 Si 0.92 44.14 27.28 68.60 1.87 46.02 16 10 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 12 H -0.25 -11.15 6.35 99.48 0.63 -10.52 16 13 N -0.53 -21.34 3.99 -879.38 -3.51 -24.85 16 14 C 0.08 3.01 4.67 85.26 0.40 3.41 16 15 C -0.16 -6.21 4.47 30.21 0.14 -6.07 16 16 C -0.11 -3.44 5.30 28.86 0.15 -3.28 16 17 C -0.11 -3.57 5.30 28.86 0.15 -3.42 16 18 C -0.11 -3.26 5.63 30.21 0.17 -3.09 16 19 C 0.06 2.35 4.88 85.26 0.42 2.76 16 20 H 0.06 2.03 7.66 -2.39 -0.02 2.01 16 21 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.05 2.04 6.05 -2.39 -0.01 2.03 16 25 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.05 2.03 5.63 -2.39 -0.01 2.02 16 27 H 0.07 2.30 6.59 -2.39 -0.02 2.28 16 28 H 0.07 3.41 4.48 -2.38 -0.01 3.40 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.98 7.52 -2.39 -0.02 1.96 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.03 1.15 7.52 -2.38 -0.02 1.13 16 34 H 0.08 2.27 7.08 -2.38 -0.02 2.25 16 35 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.01 0.53 5.53 -2.39 -0.01 0.52 16 Total: -1.00 -60.23 265.89 2.56 -57.67 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.95 Total: 14.16 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 2.95 Total: -35.41 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -3.21 Total: -82.43 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.87 Total: 46.02 kcal Total: -60.23 2.56 -57.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.394 kcal (2) G-P(sol) polarization free energy of solvation -60.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds