Wall clock time and date at job start Sun Mar 29 2020 21:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47224 * 2 1 4 4 H 1.09001 * 109.46954 * 304.68024 * 3 2 1 5 5 C 1.50699 * 109.47338 * 184.67977 * 3 2 1 6 6 H 1.07994 * 120.00166 * 239.99631 * 5 3 2 7 7 C 1.37881 * 120.00021 * 59.99671 * 5 3 2 8 8 N 1.31519 * 119.99991 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99931 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46907 * 60.00223 * 9 7 5 11 11 H 1.48506 * 109.46791 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47100 * 299.99966 * 9 7 5 13 13 N 1.46894 * 109.47404 * 64.67788 * 3 2 1 14 14 C 1.46899 * 111.00417 * 214.79451 * 13 3 2 15 15 C 1.53000 * 109.47100 * 273.01256 * 14 13 3 16 16 C 1.52997 * 109.47404 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47274 * 59.99559 * 16 15 14 18 18 C 1.52997 * 109.46963 * 300.00080 * 17 16 15 19 19 C 1.53002 * 109.47339 * 153.00961 * 14 13 3 20 20 H 1.09001 * 109.47242 * 54.48136 * 1 2 3 21 21 H 1.09007 * 109.46885 * 174.47666 * 1 2 3 22 22 H 1.08997 * 109.46874 * 294.47454 * 1 2 3 23 23 H 1.09001 * 109.47352 * 239.99960 * 2 1 3 24 24 H 1.09003 * 109.47271 * 120.00132 * 2 1 3 25 25 H 0.96994 * 119.99904 * 179.97438 * 8 7 5 26 26 H 1.00907 * 111.00093 * 338.74624 * 13 3 2 27 27 H 1.09004 * 109.47093 * 33.00700 * 14 13 3 28 28 H 1.09004 * 109.46694 * 299.99688 * 15 14 13 29 29 H 1.08999 * 109.47139 * 59.99647 * 15 14 13 30 30 H 1.09004 * 109.46853 * 299.99483 * 16 15 14 31 31 H 1.08998 * 109.47328 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47195 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.46857 * 60.00038 * 17 16 15 34 34 H 1.08998 * 109.47509 * 300.00442 * 18 17 16 35 35 H 1.09003 * 109.47484 * 179.97438 * 18 17 16 36 36 H 1.08998 * 109.46868 * 300.00059 * 19 14 13 37 37 H 1.08997 * 109.46857 * 59.99705 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6098 1.9799 -0.8451 5 6 3.5425 1.4441 -0.1159 6 1 4.1437 1.8901 0.6625 7 6 4.1497 0.8760 -1.2158 8 7 3.4176 0.3333 -2.1640 9 14 6.0122 0.8787 -1.3598 10 1 6.5987 0.1469 -0.2084 11 1 6.4117 0.2128 -2.6256 12 1 6.5066 2.2790 -1.3603 13 7 1.6448 2.1016 1.2518 14 6 1.3415 3.5212 1.0265 15 6 2.6291 4.3409 1.1328 16 6 2.3132 5.8195 0.8987 17 6 1.3138 6.3006 1.9526 18 6 0.0263 5.4810 1.8462 19 6 0.3419 4.0027 2.0800 20 1 -0.3634 0.5970 -0.8364 21 1 -0.3633 -1.0230 -0.0989 22 1 -0.3633 0.4257 0.9353 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8448 -0.0660 -2.9379 26 1 0.8625 1.6281 1.6785 27 1 0.9115 3.6476 0.0329 28 1 3.0592 4.2145 2.1264 29 1 3.3412 3.9978 0.3823 30 1 1.8829 5.9462 -0.0947 31 1 3.2306 6.4033 0.9741 32 1 1.0885 7.3538 1.7856 33 1 1.7442 6.1738 2.9460 34 1 -0.4040 5.6076 0.8527 35 1 -0.6856 5.8233 2.5972 36 1 -0.5753 3.4188 2.0041 37 1 0.7720 3.8763 3.0735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036678288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:48 Heat of formation + Delta-G solvation = -32.618478 kcal Electronic energy + Delta-G solvation = -14862.059990 eV Core-core repulsion = 12637.758532 eV Total energy + Delta-G solvation = -2224.301458 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.33540 -35.54390 -32.30742 -31.10772 -30.31606 -27.92803 -25.97892 -22.77783 -22.14352 -21.09083 -19.50344 -19.10211 -16.16584 -15.26916 -14.71603 -14.37790 -13.84522 -13.77654 -13.47213 -12.96245 -12.65860 -12.12219 -11.82544 -11.70924 -11.41610 -11.06169 -10.95751 -10.75787 -10.68083 -10.61017 -10.25317 -10.06812 -9.90107 -9.68129 -9.52511 -9.22618 -8.97428 -8.27089 -7.13763 -5.90272 -3.93001 3.37511 3.41464 3.45076 4.49459 4.99988 5.14066 5.15234 5.36974 5.53942 5.66569 5.82679 5.89290 5.96528 5.98276 6.04819 6.17043 6.19404 6.23671 6.31171 6.43279 6.49364 6.56631 6.58753 6.74344 6.86646 6.99967 7.11121 7.16374 7.28149 7.56628 7.83468 8.00480 8.42404 8.51641 8.84544 9.14703 9.71093 11.15115 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028517 B = 0.010303 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.644877 B = 2717.051861 C = 3486.986417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.219 3.781 4 H 0.005 0.995 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.685 5.685 14 C 0.099 3.901 15 C -0.105 4.105 16 C -0.121 4.121 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.122 4.122 20 H 0.041 0.959 21 H 0.036 0.964 22 H 0.034 0.966 23 H 0.099 0.901 24 H 0.040 0.960 25 H 0.258 0.742 26 H 0.317 0.683 27 H 0.032 0.968 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 7.224 5.756 10.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.316 5.316 14 C -0.011 4.011 15 C -0.143 4.143 16 C -0.159 4.159 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.160 4.160 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.117 0.883 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.792 7.234 5.767 10.419 hybrid contribution 0.122 -0.153 -0.654 0.683 sum -4.670 7.080 5.113 9.904 Atomic orbital electron populations 1.21880 0.99684 0.99618 0.99503 1.21858 0.91160 1.00852 1.03055 1.19241 0.95377 0.89605 0.84622 0.97717 1.21227 0.91248 1.35540 1.04378 0.91977 1.24975 0.97936 0.95868 0.95966 1.69863 1.34723 1.39575 1.09763 0.86649 0.86103 0.78098 0.77042 1.20392 1.21571 1.20453 1.60739 1.40446 1.00731 1.29698 1.21402 0.93942 0.90092 0.95693 1.21539 0.98241 0.91940 1.02597 1.21579 0.98268 0.97533 0.98484 1.21526 0.96000 0.98300 0.99606 1.21474 0.97154 0.95517 1.01134 1.21768 0.98638 0.95334 1.00266 0.93949 0.94445 0.94698 0.88273 0.94157 0.93163 0.86510 0.94986 0.92420 0.90185 0.92550 0.92608 0.92910 0.92267 0.92382 0.92698 0.92950 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.67 37.16 0.36 -2.57 16 2 C -0.13 -3.10 5.29 -26.73 -0.14 -3.25 16 3 C 0.22 5.47 2.04 -68.87 -0.14 5.33 16 4 H 0.01 0.14 7.24 -51.93 -0.38 -0.23 16 5 C -0.48 -13.35 7.57 -34.44 -0.26 -13.61 16 6 H 0.06 1.74 7.59 -52.49 -0.40 1.34 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.77 11.30 55.43 0.63 -25.15 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 N -0.68 -14.66 6.16 -100.96 -0.62 -15.28 16 14 C 0.10 1.88 2.49 -67.71 -0.17 1.71 16 15 C -0.11 -1.96 5.30 -26.73 -0.14 -2.10 16 16 C -0.12 -1.83 5.92 -26.73 -0.16 -1.99 16 17 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 18 C -0.11 -1.51 5.92 -26.76 -0.16 -1.67 16 19 C -0.12 -1.86 5.17 -26.75 -0.14 -2.00 16 20 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 22 H 0.03 0.61 6.66 -51.93 -0.35 0.27 16 23 H 0.10 2.65 5.96 -51.93 -0.31 2.34 16 24 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.32 6.27 6.11 -39.29 -0.24 6.03 16 27 H 0.03 0.67 7.31 -51.93 -0.38 0.29 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.75 6.77 -51.93 -0.35 1.40 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 282.53 15.07 4.26 4.26 Total: -1.00 -27.78 282.53 -8.57 -36.35 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.61 Total: 3.62 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -1.20 Total: -20.47 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.00 Total: -40.43 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.78 -8.57 -36.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036678288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.733 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds