Wall clock time and date at job start Sun Mar 29 2020 21:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47224 * 2 1 4 4 H 1.09001 * 109.46954 * 304.68024 * 3 2 1 5 5 C 1.50699 * 109.47338 * 184.67977 * 3 2 1 6 6 H 1.07994 * 120.00166 * 239.99631 * 5 3 2 7 7 C 1.37881 * 120.00021 * 59.99671 * 5 3 2 8 8 N 1.31519 * 119.99991 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99931 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46907 * 60.00223 * 9 7 5 11 11 H 1.48506 * 109.46791 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47100 * 299.99966 * 9 7 5 13 13 N 1.46894 * 109.47404 * 64.67788 * 3 2 1 14 14 C 1.46899 * 111.00417 * 214.79451 * 13 3 2 15 15 C 1.53000 * 109.47100 * 273.01256 * 14 13 3 16 16 C 1.52997 * 109.47404 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47274 * 59.99559 * 16 15 14 18 18 C 1.52997 * 109.46963 * 300.00080 * 17 16 15 19 19 C 1.53002 * 109.47339 * 153.00961 * 14 13 3 20 20 H 1.09001 * 109.47242 * 54.48136 * 1 2 3 21 21 H 1.09007 * 109.46885 * 174.47666 * 1 2 3 22 22 H 1.08997 * 109.46874 * 294.47454 * 1 2 3 23 23 H 1.09001 * 109.47352 * 239.99960 * 2 1 3 24 24 H 1.09003 * 109.47271 * 120.00132 * 2 1 3 25 25 H 0.96994 * 119.99904 * 179.97438 * 8 7 5 26 26 H 1.00907 * 111.00093 * 338.74624 * 13 3 2 27 27 H 1.09004 * 109.47093 * 33.00700 * 14 13 3 28 28 H 1.09004 * 109.46694 * 299.99688 * 15 14 13 29 29 H 1.08999 * 109.47139 * 59.99647 * 15 14 13 30 30 H 1.09004 * 109.46853 * 299.99483 * 16 15 14 31 31 H 1.08998 * 109.47328 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47195 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.46857 * 60.00038 * 17 16 15 34 34 H 1.08998 * 109.47509 * 300.00442 * 18 17 16 35 35 H 1.09003 * 109.47484 * 179.97438 * 18 17 16 36 36 H 1.08998 * 109.46868 * 300.00059 * 19 14 13 37 37 H 1.08997 * 109.46857 * 59.99705 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6098 1.9799 -0.8451 5 6 3.5425 1.4441 -0.1159 6 1 4.1437 1.8901 0.6625 7 6 4.1497 0.8760 -1.2158 8 7 3.4176 0.3333 -2.1640 9 14 6.0122 0.8787 -1.3598 10 1 6.5987 0.1469 -0.2084 11 1 6.4117 0.2128 -2.6256 12 1 6.5066 2.2790 -1.3603 13 7 1.6448 2.1016 1.2518 14 6 1.3415 3.5212 1.0265 15 6 2.6291 4.3409 1.1328 16 6 2.3132 5.8195 0.8987 17 6 1.3138 6.3006 1.9526 18 6 0.0263 5.4810 1.8462 19 6 0.3419 4.0027 2.0800 20 1 -0.3634 0.5970 -0.8364 21 1 -0.3633 -1.0230 -0.0989 22 1 -0.3633 0.4257 0.9353 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8448 -0.0660 -2.9379 26 1 0.8625 1.6281 1.6785 27 1 0.9115 3.6476 0.0329 28 1 3.0592 4.2145 2.1264 29 1 3.3412 3.9978 0.3823 30 1 1.8829 5.9462 -0.0947 31 1 3.2306 6.4033 0.9741 32 1 1.0885 7.3538 1.7856 33 1 1.7442 6.1738 2.9460 34 1 -0.4040 5.6076 0.8527 35 1 -0.6856 5.8233 2.5972 36 1 -0.5753 3.4188 2.0041 37 1 0.7720 3.8763 3.0735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036678288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:48 Heat of formation + Delta-G solvation = -48.857362 kcal Electronic energy + Delta-G solvation = -14862.764161 eV Core-core repulsion = 12637.758532 eV Total energy + Delta-G solvation = -2225.005629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.77341 -37.26288 -34.25502 -32.80311 -31.58778 -29.55165 -27.87167 -24.66177 -23.43363 -22.45653 -21.36597 -20.49678 -18.28090 -16.80394 -16.61783 -15.84005 -15.57996 -15.08336 -14.84826 -14.54066 -14.43769 -13.76279 -13.33610 -13.08323 -12.95869 -12.82290 -12.76043 -12.52549 -12.23023 -11.99409 -11.93290 -11.63818 -11.53828 -11.40916 -11.04963 -10.93186 -10.70588 -10.39208 -8.96512 -8.03794 -6.14098 1.40756 1.42046 1.49696 2.44695 3.20280 3.58038 3.94010 3.96106 4.25958 4.40699 4.47690 4.49954 4.55310 4.61315 4.68627 4.71004 4.75788 4.84215 5.00746 5.08492 5.19315 5.20234 5.26447 5.32489 5.35236 5.38778 5.44042 5.57122 5.60742 5.68344 5.79059 5.93982 6.40467 6.62684 6.99020 7.06140 7.53932 8.99141 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028517 B = 0.010303 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.644877 B = 2717.051861 C = 3486.986417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.227 3.773 4 H -0.032 1.032 5 C -0.499 4.499 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.686 5.686 14 C 0.097 3.903 15 C -0.101 4.101 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.114 4.114 20 H 0.033 0.967 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.037 0.963 25 H 0.259 0.741 26 H 0.328 0.672 27 H 0.008 0.992 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 8.265 7.205 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.119 3.881 4 H -0.015 1.015 5 C -0.538 4.538 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.318 5.318 14 C -0.013 4.013 15 C -0.140 4.140 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.152 4.152 20 H 0.053 0.947 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.146 0.854 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.525 8.282 7.232 12.306 hybrid contribution 0.351 -0.468 -1.103 1.248 sum -5.174 7.814 6.129 11.199 Atomic orbital electron populations 1.21740 0.96278 1.01089 1.00424 1.21687 0.94242 0.99372 1.01241 1.18985 0.94035 0.90275 0.84834 1.01484 1.21464 0.92739 1.35355 1.04224 0.93152 1.25689 1.02107 0.95656 0.95736 1.69998 1.36207 1.40098 1.10076 0.85713 0.81172 0.78156 0.77179 1.19841 1.21013 1.20089 1.60647 1.41266 1.02107 1.27772 1.21478 0.95133 0.88702 0.96036 1.21454 0.97144 0.94487 1.00883 1.21548 0.99728 0.95004 0.99233 1.21511 0.95035 0.99573 0.98819 1.21488 0.97837 0.93729 1.01968 1.21701 0.97635 0.97122 0.98725 0.94740 0.92347 0.92340 0.91466 0.94458 0.93239 0.85369 0.97371 0.92576 0.94554 0.93212 0.91541 0.90445 0.91560 0.92668 0.89837 0.91993 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.67 71.98 0.70 -4.58 16 2 C -0.13 -6.11 5.29 30.59 0.16 -5.95 16 3 C 0.23 11.70 2.04 44.17 0.09 11.79 16 4 H -0.03 -1.88 7.24 -2.39 -0.02 -1.90 16 5 C -0.50 -28.34 7.57 25.60 0.19 -28.15 16 6 H 0.05 2.91 7.59 -2.91 -0.02 2.89 16 7 C 0.01 0.31 5.29 84.65 0.45 0.76 16 8 N -0.92 -54.39 11.30 21.45 0.24 -54.15 16 9 Si 0.95 45.28 29.54 68.60 2.03 47.30 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.69 -29.58 6.16 -473.32 -2.91 -32.50 16 14 C 0.10 3.66 2.49 44.92 0.11 3.78 16 15 C -0.10 -3.83 5.30 30.59 0.16 -3.67 16 16 C -0.12 -3.44 5.92 30.59 0.18 -3.25 16 17 C -0.11 -2.57 5.92 30.59 0.18 -2.39 16 18 C -0.11 -2.60 5.92 30.58 0.18 -2.42 16 19 C -0.11 -3.22 5.17 30.58 0.16 -3.07 16 20 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 22 H 0.06 1.94 6.66 -2.39 -0.02 1.93 16 23 H 0.07 3.69 5.96 -2.39 -0.01 3.68 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.33 12.65 6.11 -89.69 -0.55 12.10 16 27 H 0.01 0.35 7.31 -2.38 -0.02 0.34 16 28 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.04 1.66 6.77 -2.39 -0.02 1.64 16 30 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.43 282.53 2.39 -59.04 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.47 Total: 17.44 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 2.57 Total: -37.14 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -2.67 Total: -86.64 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -61.43 2.39 -59.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036678288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.185 kcal (2) G-P(sol) polarization free energy of solvation -61.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds