Wall clock time and date at job start Sun Mar 29 2020 21:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 9 9 N 1.46905 * 109.46858 * 179.97438 * 7 6 5 10 10 C 1.46897 * 110.99940 * 84.99687 * 9 7 6 11 11 C 1.50707 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99855 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00011 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99793 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47141 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47132 * 120.00181 * 15 13 11 18 18 H 1.48501 * 109.47154 * 239.99849 * 15 13 11 19 19 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 20 20 H 1.08993 * 109.47194 * 179.97438 * 19 7 6 21 21 C 1.53006 * 109.47127 * 59.99878 * 19 7 6 22 22 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 24 24 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 25 25 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 26 26 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 29 29 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 31 31 H 1.00904 * 110.99628 * 208.94659 * 9 7 6 32 32 H 1.08992 * 109.47487 * 300.00141 * 10 9 7 33 33 H 1.09003 * 109.47270 * 60.00180 * 10 9 7 34 34 H 0.97000 * 120.00136 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.46801 * 300.00272 * 21 19 7 36 36 H 1.08998 * 109.46505 * 59.99871 * 21 19 7 37 37 H 1.09000 * 109.47050 * 180.02562 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3054 1.2498 9 7 4.0582 -1.4153 2.4491 10 6 5.4057 -0.9554 2.8105 11 6 5.8723 -1.6866 4.0429 12 1 5.2320 -2.4199 4.5105 13 6 7.1165 -1.4194 4.5733 14 7 7.8960 -0.5261 4.0041 15 14 7.6951 -2.3263 6.1005 16 1 6.6402 -3.2727 6.5437 17 1 8.9361 -3.0798 5.7884 18 1 7.9695 -1.3476 7.1832 19 6 2.0394 -0.7216 1.2493 20 1 1.6761 -0.2082 2.1395 21 6 1.5289 -2.1639 1.2490 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6765 -1.7490 -1.2492 26 1 1.6767 -0.2075 -2.1392 27 1 3.9333 -1.2354 -2.1390 28 1 3.9337 0.3056 -1.2487 29 1 5.1695 -1.4435 0.0008 30 1 3.7157 -2.4710 0.0001 31 1 3.4176 -1.2993 3.2200 32 1 6.0911 -1.1561 1.9872 33 1 5.3824 0.1157 3.0110 34 1 8.7715 -0.3384 4.3771 35 1 1.8922 -2.6777 0.3590 36 1 1.8919 -2.6779 2.1390 37 1 0.4389 -2.1635 1.2483 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036723360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:35 Heat of formation + Delta-G solvation = -33.380030 kcal Electronic energy + Delta-G solvation = -14656.473938 eV Core-core repulsion = 12432.139457 eV Total energy + Delta-G solvation = -2224.334481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.35529 -34.78517 -32.54123 -32.18086 -30.00965 -27.09831 -25.92962 -25.01103 -21.95073 -21.70619 -20.00068 -18.11994 -16.40586 -15.37159 -14.96981 -14.43273 -14.32472 -14.07365 -13.67254 -12.73288 -12.60091 -12.29751 -12.22195 -11.88443 -11.73787 -11.30857 -11.25474 -10.98624 -10.87799 -10.72042 -10.57181 -10.39877 -10.17649 -9.87955 -9.67367 -9.45656 -9.05591 -8.44850 -7.19443 -5.99954 -4.01481 3.32682 3.39791 3.45083 4.45511 4.85515 4.87650 4.97494 5.33693 5.35918 5.41587 5.55817 5.58803 5.66890 5.75500 5.77300 5.86778 5.97686 6.03326 6.06971 6.14857 6.25306 6.29002 6.38375 6.42845 6.48407 6.69481 6.73729 6.78222 6.96921 7.35479 7.48970 7.84342 8.19409 8.48897 8.69691 9.08943 9.63425 11.11259 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054388 B = 0.006656 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.693916 B = 4205.534515 C = 4436.849682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.106 4.106 7 C 0.092 3.908 8 H 0.031 0.969 9 N -0.684 5.684 10 C 0.194 3.806 11 C -0.511 4.511 12 H 0.062 0.938 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.086 4.086 20 H 0.062 0.938 21 C -0.142 4.142 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.327 0.673 32 H 0.028 0.972 33 H -0.016 1.016 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 0.364 -8.726 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.018 4.018 8 H 0.049 0.951 9 N -0.315 5.315 10 C 0.067 3.933 11 C -0.550 4.550 12 H 0.080 0.920 13 C -0.147 4.147 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.104 4.104 20 H 0.080 0.920 21 C -0.199 4.199 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.046 0.954 33 H 0.001 0.999 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.042 -0.106 -9.046 15.062 hybrid contribution 0.370 0.573 1.195 1.376 sum -11.672 0.467 -7.851 14.075 Atomic orbital electron populations 1.21876 0.95721 1.01766 1.01039 1.21119 0.94950 0.99270 0.95169 0.91695 1.21609 0.95907 1.00660 0.96815 1.21547 0.95262 1.00695 0.98237 1.21527 1.00632 0.99550 0.92719 1.21429 0.92364 0.95362 0.92669 0.95149 1.60694 1.05706 1.59496 1.05570 1.19582 0.84446 0.93151 0.96078 1.21254 1.01082 1.22192 1.10488 0.91980 1.24996 0.96708 0.95389 0.97570 1.69978 1.09926 1.33379 1.40576 0.86446 0.78657 0.79580 0.82747 1.19677 1.21030 1.21141 1.21271 0.95533 0.96720 0.96914 0.92006 1.21866 0.99040 0.96083 1.02893 0.92377 0.92999 0.93244 0.91738 0.92813 0.92457 0.92504 0.92053 0.91468 0.85603 0.95441 0.99864 0.93037 0.92365 0.91661 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.84 37.16 0.33 -1.22 16 2 C -0.09 -1.08 2.50 -90.62 -0.23 -1.30 16 3 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.11 -1.35 4.93 -26.73 -0.13 -1.48 16 5 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 6 C -0.11 -1.80 5.15 -26.73 -0.14 -1.94 16 7 C 0.09 1.67 2.19 -67.71 -0.15 1.52 16 8 H 0.03 0.61 7.80 -51.93 -0.41 0.20 16 9 N -0.68 -14.85 5.58 -107.99 -0.60 -15.45 16 10 C 0.19 5.20 5.24 -4.97 -0.03 5.17 16 11 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 12 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 13 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 15 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.09 -1.25 2.10 -90.62 -0.19 -1.44 16 20 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 21 C -0.14 -1.96 7.99 37.16 0.30 -1.67 16 22 H 0.06 0.59 6.42 -51.93 -0.33 0.26 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.18 7.45 -51.93 -0.39 0.79 16 30 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 31 H 0.33 6.85 8.18 -39.29 -0.32 6.53 16 32 H 0.03 0.79 7.43 -51.93 -0.39 0.41 16 33 H -0.02 -0.47 8.06 -51.93 -0.42 -0.89 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.06 0.80 4.81 -51.93 -0.25 0.55 16 36 H 0.06 1.00 7.48 -51.93 -0.39 0.61 16 37 H 0.04 0.52 6.42 -51.93 -0.33 0.19 16 LS Contribution 279.36 15.07 4.21 4.21 Total: -1.00 -29.63 279.36 -7.88 -37.51 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.39 Total: 1.09 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.81 Total: -17.74 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.13 Total: -42.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.63 -7.88 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.127 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds