Wall clock time and date at job start Sun Mar 29 2020 21:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 9 9 N 1.46905 * 109.46858 * 179.97438 * 7 6 5 10 10 C 1.46897 * 110.99940 * 84.99687 * 9 7 6 11 11 C 1.50707 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99855 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00011 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99793 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47141 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47132 * 120.00181 * 15 13 11 18 18 H 1.48501 * 109.47154 * 239.99849 * 15 13 11 19 19 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 20 20 H 1.08993 * 109.47194 * 179.97438 * 19 7 6 21 21 C 1.53006 * 109.47127 * 59.99878 * 19 7 6 22 22 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 24 24 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 25 25 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 26 26 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 29 29 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 31 31 H 1.00904 * 110.99628 * 208.94659 * 9 7 6 32 32 H 1.08992 * 109.47487 * 300.00141 * 10 9 7 33 33 H 1.09003 * 109.47270 * 60.00180 * 10 9 7 34 34 H 0.97000 * 120.00136 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.46801 * 300.00272 * 21 19 7 36 36 H 1.08998 * 109.46505 * 59.99871 * 21 19 7 37 37 H 1.09000 * 109.47050 * 180.02562 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3054 1.2498 9 7 4.0582 -1.4153 2.4491 10 6 5.4057 -0.9554 2.8105 11 6 5.8723 -1.6866 4.0429 12 1 5.2320 -2.4199 4.5105 13 6 7.1165 -1.4194 4.5733 14 7 7.8960 -0.5261 4.0041 15 14 7.6951 -2.3263 6.1005 16 1 6.6402 -3.2727 6.5437 17 1 8.9361 -3.0798 5.7884 18 1 7.9695 -1.3476 7.1832 19 6 2.0394 -0.7216 1.2493 20 1 1.6761 -0.2082 2.1395 21 6 1.5289 -2.1639 1.2490 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6765 -1.7490 -1.2492 26 1 1.6767 -0.2075 -2.1392 27 1 3.9333 -1.2354 -2.1390 28 1 3.9337 0.3056 -1.2487 29 1 5.1695 -1.4435 0.0008 30 1 3.7157 -2.4710 0.0001 31 1 3.4176 -1.2993 3.2200 32 1 6.0911 -1.1561 1.9872 33 1 5.3824 0.1157 3.0110 34 1 8.7715 -0.3384 4.3771 35 1 1.8922 -2.6777 0.3590 36 1 1.8919 -2.6779 2.1390 37 1 0.4389 -2.1635 1.2483 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036723360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:35 Heat of formation + Delta-G solvation = -51.687274 kcal Electronic energy + Delta-G solvation = -14657.267800 eV Core-core repulsion = 12432.139457 eV Total energy + Delta-G solvation = -2225.128343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61250 -36.53083 -34.52312 -33.40255 -31.50268 -28.65409 -27.42283 -26.33399 -23.93686 -22.90140 -21.41259 -19.39453 -18.50338 -16.80882 -16.56274 -16.11322 -15.91175 -15.29926 -14.97449 -14.36904 -14.14143 -13.72751 -13.53745 -13.32415 -13.13733 -12.79551 -12.65150 -12.52985 -12.40760 -12.12512 -12.06764 -12.00655 -11.50774 -11.33586 -11.11187 -10.81816 -10.79029 -10.67233 -9.08723 -8.24091 -6.35779 1.39524 1.40606 1.54765 2.38810 3.08943 3.48413 3.78626 3.79946 4.10535 4.26897 4.33759 4.44902 4.50188 4.57908 4.66388 4.78115 4.83740 4.93069 5.00731 5.07462 5.11466 5.13324 5.19543 5.21937 5.27724 5.32026 5.38919 5.46437 5.51974 5.57435 5.62085 5.77292 6.03324 6.48115 6.74662 6.90426 7.35704 8.88006 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054388 B = 0.006656 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.693916 B = 4205.534515 C = 4436.849682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 H 0.057 0.943 4 C -0.107 4.107 5 C -0.115 4.115 6 C -0.103 4.103 7 C 0.088 3.912 8 H 0.006 0.994 9 N -0.679 5.679 10 C 0.212 3.788 11 C -0.534 4.534 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.937 5.937 15 Si 0.976 3.024 16 H -0.262 1.262 17 H -0.278 1.278 18 H -0.277 1.277 19 C -0.080 4.080 20 H 0.058 0.942 21 C -0.136 4.136 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.332 0.668 32 H -0.003 1.003 33 H -0.048 1.048 34 H 0.265 0.735 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.182 -0.453 -8.949 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.141 4.141 7 C -0.022 4.022 8 H 0.024 0.976 9 N -0.309 5.309 10 C 0.084 3.916 11 C -0.573 4.573 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.800 3.200 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.098 4.098 20 H 0.077 0.923 21 C -0.193 4.193 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.015 0.985 33 H -0.030 1.030 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.790 -0.923 -9.282 16.649 hybrid contribution 0.917 0.862 1.224 1.756 sum -12.873 -0.061 -8.058 15.187 Atomic orbital electron populations 1.21829 0.93504 1.02562 1.01965 1.21113 0.96704 0.98492 0.94050 0.92459 1.21601 0.93993 1.01444 0.97428 1.21522 0.96988 0.99948 0.96819 1.21488 0.98493 1.00153 0.93958 1.21582 0.95330 0.93719 0.91528 0.97571 1.60614 1.03779 1.59674 1.06858 1.19191 0.86628 0.91175 0.94626 1.21597 1.01755 1.22615 1.11287 0.91696 1.26006 0.96678 0.96098 1.01128 1.70113 1.10450 1.34752 1.42375 0.85238 0.78251 0.78339 0.78172 1.18549 1.20326 1.20216 1.21227 0.92265 0.98002 0.98354 0.92342 1.21820 1.00637 0.94816 1.02056 0.91588 0.92907 0.91611 0.90876 0.90424 0.90780 0.93113 0.95526 0.91147 0.85096 0.98496 1.03001 0.92624 0.92117 0.93568 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.84 71.98 0.64 -1.86 16 2 C -0.08 -1.94 2.50 -10.79 -0.03 -1.96 16 3 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.11 -2.28 4.93 30.59 0.15 -2.13 16 5 C -0.11 -3.02 5.92 30.59 0.18 -2.84 16 6 C -0.10 -3.56 5.15 30.60 0.16 -3.40 16 7 C 0.09 3.31 2.19 44.92 0.10 3.40 16 8 H 0.01 0.26 7.80 -2.39 -0.02 0.25 16 9 N -0.68 -30.58 5.58 -495.56 -2.76 -33.35 16 10 C 0.21 11.94 5.24 85.56 0.45 12.38 16 11 C -0.53 -31.56 9.32 25.60 0.24 -31.32 16 12 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 15 Si 0.98 45.29 29.54 68.60 2.03 47.32 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 C -0.08 -2.26 2.10 -10.79 -0.02 -2.29 16 20 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 21 C -0.14 -3.52 7.99 71.98 0.57 -2.95 16 22 H 0.07 1.08 6.42 -2.39 -0.02 1.06 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.47 6.43 -2.39 -0.02 1.45 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.03 1.07 7.45 -2.39 -0.02 1.05 16 30 H 0.07 2.37 6.43 -2.39 -0.02 2.35 16 31 H 0.33 14.27 8.18 -89.69 -0.73 13.54 16 32 H 0.00 -0.19 7.43 -2.39 -0.02 -0.21 16 33 H -0.05 -2.92 8.06 -2.39 -0.02 -2.94 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.06 1.54 4.81 -2.39 -0.01 1.53 16 36 H 0.05 1.36 7.48 -2.39 -0.02 1.35 16 37 H 0.07 1.46 6.42 -2.39 -0.02 1.44 16 Total: -1.00 -65.29 279.36 2.74 -62.55 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.29 Total: 14.08 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 2.90 Total: -32.57 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -2.48 Total: -91.38 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -65.29 2.74 -62.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.860 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds