Wall clock time and date at job start Sun Mar 29 2020 21:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99861 * 2 1 3 5 5 C 1.52996 * 109.46891 * 300.00332 * 4 2 1 6 6 C 1.53000 * 109.47328 * 299.99597 * 5 4 2 7 7 C 1.52997 * 109.47060 * 60.00126 * 6 5 4 8 8 H 1.08998 * 109.47533 * 59.99948 * 7 6 5 9 9 N 1.46894 * 109.47515 * 180.02562 * 7 6 5 10 10 C 1.46899 * 111.00313 * 275.00230 * 9 7 6 11 11 C 1.50699 * 109.47386 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99693 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99995 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00044 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99988 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47029 * 90.00030 * 15 13 11 17 17 H 1.48494 * 109.47116 * 210.00034 * 15 13 11 18 18 H 1.48498 * 109.47176 * 330.00056 * 15 13 11 19 19 C 1.52997 * 109.47092 * 119.99853 * 2 1 3 20 20 H 1.09001 * 109.47375 * 180.02562 * 19 2 1 21 21 C 1.52997 * 109.47232 * 300.00075 * 19 2 1 22 22 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 24 24 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 25 25 H 1.08992 * 109.47056 * 179.97438 * 4 2 1 26 26 H 1.09004 * 109.47006 * 60.00102 * 4 2 1 27 27 H 1.09004 * 109.47368 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.47372 * 59.99964 * 5 4 2 29 29 H 1.09002 * 109.47398 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47194 * 300.00476 * 6 5 4 31 31 H 1.00906 * 111.00118 * 38.95572 * 9 7 6 32 32 H 1.09003 * 109.46741 * 300.00007 * 10 9 7 33 33 H 1.09003 * 109.47153 * 59.99606 * 10 9 7 34 34 H 0.96996 * 119.99862 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.47289 * 60.00075 * 21 19 2 36 36 H 1.09004 * 109.47261 * 179.97438 * 21 19 2 37 37 H 1.09002 * 109.47153 * 299.99992 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1637 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2493 8 1 0.4400 -2.1637 1.2493 9 7 2.0201 -2.8559 2.4487 10 6 1.1369 -3.9728 2.8099 11 6 1.6708 -4.6574 4.0416 12 1 2.5760 -4.2989 4.5091 13 6 1.0044 -5.7421 4.5711 14 7 -0.0971 -6.1795 4.0009 15 14 1.6666 -6.5912 6.0975 16 1 1.0851 -5.9575 7.3081 17 1 1.2957 -8.0287 6.0645 18 1 3.1456 -6.4623 6.1333 19 6 2.0400 -0.7212 1.2492 20 1 3.1300 -0.7208 1.2495 21 6 1.5300 0.0000 2.4984 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.1300 -0.7208 -1.2494 26 1 1.6768 -0.2074 -2.1392 27 1 1.8931 -2.6775 -2.1394 28 1 0.4401 -2.1637 -1.2493 29 1 1.6770 -3.9128 -0.0002 30 1 3.1300 -2.8850 0.0001 31 1 2.9696 -3.1725 2.3210 32 1 0.1348 -3.5934 3.0102 33 1 1.0976 -4.6859 1.9864 34 1 -0.5661 -6.9423 4.3736 35 1 0.4400 0.0000 2.4985 36 1 1.8930 -0.5141 3.3885 37 1 1.8933 1.0277 2.4984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036723364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:37 Heat of formation + Delta-G solvation = -33.891005 kcal Electronic energy + Delta-G solvation = -14753.881008 eV Core-core repulsion = 12529.524369 eV Total energy + Delta-G solvation = -2224.356639 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.34657 -34.73971 -32.43806 -32.41283 -29.69628 -27.15950 -26.03426 -24.77397 -22.03074 -21.14920 -20.62247 -18.25044 -16.35926 -15.24496 -14.93495 -14.58320 -13.99935 -13.77196 -13.67767 -13.00428 -12.61390 -12.13893 -12.12220 -11.87674 -11.56833 -11.41971 -11.21591 -11.00157 -10.76681 -10.66976 -10.65881 -10.35367 -10.08726 -9.87386 -9.83591 -9.49480 -9.06716 -8.44551 -7.14491 -6.00134 -4.01699 3.33802 3.39422 3.43271 4.45365 4.90023 4.94158 5.00904 5.35611 5.41622 5.44359 5.52446 5.58093 5.65897 5.83422 5.88376 5.89966 6.04422 6.04870 6.11873 6.18537 6.32186 6.36250 6.41494 6.47395 6.54130 6.58258 6.72886 6.89459 6.99275 7.33825 7.50936 7.83556 8.18727 8.47912 8.69823 9.08407 9.63138 11.10889 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048799 B = 0.007076 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.649735 B = 3956.177728 C = 4149.666527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 H 0.063 0.937 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.148 4.148 7 C 0.091 3.909 8 H 0.072 0.928 9 N -0.683 5.683 10 C 0.196 3.804 11 C -0.513 4.513 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.072 4.072 20 H 0.061 0.939 21 C -0.137 4.137 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.326 0.674 32 H 0.025 0.975 33 H -0.015 1.015 34 H 0.260 0.740 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 10.489 -9.034 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.081 0.919 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.187 4.187 7 C -0.020 4.020 8 H 0.090 0.910 9 N -0.312 5.312 10 C 0.069 3.931 11 C -0.551 4.551 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.091 4.091 20 H 0.080 0.920 21 C -0.194 4.194 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.043 0.957 33 H 0.003 0.997 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.418 10.774 -8.549 13.964 hybrid contribution 0.451 -1.279 0.069 1.358 sum 2.869 9.495 -8.480 13.049 Atomic orbital electron populations 1.21986 0.95621 1.02286 1.01005 1.21137 0.95893 0.98584 0.94901 0.91867 1.21552 1.00230 0.95865 0.97317 1.21516 1.00903 0.95366 0.97669 1.22295 1.00500 0.99969 0.95974 1.21580 0.99383 0.92703 0.88301 0.90994 1.60733 1.06015 1.31871 1.32542 1.19540 0.92474 0.86326 0.94757 1.21217 1.10210 1.12581 1.11128 0.92054 1.24987 0.95040 0.97076 0.97504 1.69964 1.17382 1.25988 1.40481 0.86505 0.79215 0.78491 0.83222 1.20649 1.21352 1.19892 1.21063 0.99520 0.94792 0.93719 0.92029 1.21726 1.00707 0.98128 0.98864 0.91946 0.92431 0.93563 0.92382 0.92671 0.92852 0.91881 0.91966 0.92495 0.85711 0.95672 0.99690 0.92992 0.93229 0.90885 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.15 37.16 0.30 -1.60 16 2 C -0.09 -1.09 2.72 -90.62 -0.25 -1.34 16 3 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.34 5.45 -26.73 -0.15 -1.49 16 5 C -0.12 -1.56 5.65 -26.73 -0.15 -1.71 16 6 C -0.15 -2.39 5.17 -26.73 -0.14 -2.53 16 7 C 0.09 1.62 1.64 -67.71 -0.11 1.51 16 8 H 0.07 1.39 6.09 -51.93 -0.32 1.07 16 9 N -0.68 -14.62 5.47 -107.99 -0.59 -15.21 16 10 C 0.20 5.16 5.24 -4.98 -0.03 5.13 16 11 C -0.51 -14.67 9.32 -34.44 -0.32 -14.99 16 12 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 15 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 19 C -0.07 -1.08 2.21 -90.62 -0.20 -1.28 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.14 -2.11 8.68 37.16 0.32 -1.78 16 22 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 23 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 29 H 0.06 1.13 7.46 -51.93 -0.39 0.74 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.33 6.80 8.46 -39.29 -0.33 6.47 16 32 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 33 H -0.01 -0.41 7.44 -51.93 -0.39 -0.80 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 35 H 0.05 0.77 6.43 -51.93 -0.33 0.43 16 36 H 0.07 1.29 7.60 -51.93 -0.39 0.89 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 279.74 15.07 4.22 4.22 Total: -1.00 -29.13 279.74 -7.88 -37.02 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.41 Total: 2.05 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -0.81 Total: -18.59 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.15 Total: -41.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.13 -7.88 -37.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.124 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds