Wall clock time and date at job start Sun Mar 29 2020 21:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99861 * 2 1 3 5 5 C 1.52996 * 109.46891 * 300.00332 * 4 2 1 6 6 C 1.53000 * 109.47328 * 299.99597 * 5 4 2 7 7 C 1.52997 * 109.47060 * 60.00126 * 6 5 4 8 8 H 1.08998 * 109.47533 * 59.99948 * 7 6 5 9 9 N 1.46894 * 109.47515 * 180.02562 * 7 6 5 10 10 C 1.46899 * 111.00313 * 275.00230 * 9 7 6 11 11 C 1.50699 * 109.47386 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99693 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99995 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00044 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99988 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47029 * 90.00030 * 15 13 11 17 17 H 1.48494 * 109.47116 * 210.00034 * 15 13 11 18 18 H 1.48498 * 109.47176 * 330.00056 * 15 13 11 19 19 C 1.52997 * 109.47092 * 119.99853 * 2 1 3 20 20 H 1.09001 * 109.47375 * 180.02562 * 19 2 1 21 21 C 1.52997 * 109.47232 * 300.00075 * 19 2 1 22 22 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 24 24 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 25 25 H 1.08992 * 109.47056 * 179.97438 * 4 2 1 26 26 H 1.09004 * 109.47006 * 60.00102 * 4 2 1 27 27 H 1.09004 * 109.47368 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.47372 * 59.99964 * 5 4 2 29 29 H 1.09002 * 109.47398 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47194 * 300.00476 * 6 5 4 31 31 H 1.00906 * 111.00118 * 38.95572 * 9 7 6 32 32 H 1.09003 * 109.46741 * 300.00007 * 10 9 7 33 33 H 1.09003 * 109.47153 * 59.99606 * 10 9 7 34 34 H 0.96996 * 119.99862 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.47289 * 60.00075 * 21 19 2 36 36 H 1.09004 * 109.47261 * 179.97438 * 21 19 2 37 37 H 1.09002 * 109.47153 * 299.99992 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1637 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2493 8 1 0.4400 -2.1637 1.2493 9 7 2.0201 -2.8559 2.4487 10 6 1.1369 -3.9728 2.8099 11 6 1.6708 -4.6574 4.0416 12 1 2.5760 -4.2989 4.5091 13 6 1.0044 -5.7421 4.5711 14 7 -0.0971 -6.1795 4.0009 15 14 1.6666 -6.5912 6.0975 16 1 1.0851 -5.9575 7.3081 17 1 1.2957 -8.0287 6.0645 18 1 3.1456 -6.4623 6.1333 19 6 2.0400 -0.7212 1.2492 20 1 3.1300 -0.7208 1.2495 21 6 1.5300 0.0000 2.4984 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.1300 -0.7208 -1.2494 26 1 1.6768 -0.2074 -2.1392 27 1 1.8931 -2.6775 -2.1394 28 1 0.4401 -2.1637 -1.2493 29 1 1.6770 -3.9128 -0.0002 30 1 3.1300 -2.8850 0.0001 31 1 2.9696 -3.1725 2.3210 32 1 0.1348 -3.5934 3.0102 33 1 1.0976 -4.6859 1.9864 34 1 -0.5661 -6.9423 4.3736 35 1 0.4400 0.0000 2.4985 36 1 1.8930 -0.5141 3.3885 37 1 1.8933 1.0277 2.4984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036723364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:37 Heat of formation + Delta-G solvation = -51.662168 kcal Electronic energy + Delta-G solvation = -14754.651623 eV Core-core repulsion = 12529.524369 eV Total energy + Delta-G solvation = -2225.127254 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60230 -36.48206 -34.46646 -33.60157 -31.24061 -28.62625 -27.55042 -26.19114 -23.88956 -22.63547 -21.89704 -19.51779 -18.43067 -16.72362 -16.61283 -16.00147 -15.41059 -15.33103 -14.91681 -14.52222 -14.06297 -13.96808 -13.56500 -13.17852 -13.16904 -12.75175 -12.70652 -12.57937 -12.40422 -12.14689 -12.08207 -11.85628 -11.56678 -11.34412 -11.10442 -11.04251 -10.68578 -10.63609 -8.95744 -8.22695 -6.34099 1.39773 1.41919 1.53069 2.39334 3.10154 3.56343 3.75586 3.89374 4.12414 4.26458 4.28079 4.45871 4.48658 4.58600 4.68511 4.79755 4.83401 4.93495 4.99248 5.07655 5.12410 5.14364 5.17706 5.25596 5.30343 5.33805 5.40406 5.44546 5.51509 5.63331 5.65871 5.76064 6.04498 6.50805 6.77118 6.93018 7.37140 8.88765 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048799 B = 0.007076 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.649735 B = 3956.177728 C = 4149.666527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 H 0.086 0.914 4 C -0.107 4.107 5 C -0.113 4.113 6 C -0.143 4.143 7 C 0.090 3.910 8 H 0.049 0.951 9 N -0.680 5.680 10 C 0.215 3.785 11 C -0.535 4.535 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.973 3.027 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.066 4.066 20 H 0.067 0.933 21 C -0.134 4.134 22 H 0.041 0.959 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.331 0.669 32 H -0.008 1.008 33 H -0.042 1.042 34 H 0.265 0.735 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.130 11.750 -9.494 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 H 0.104 0.896 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.183 4.183 7 C -0.020 4.020 8 H 0.068 0.932 9 N -0.309 5.309 10 C 0.087 3.913 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.798 3.202 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.085 4.085 20 H 0.085 0.915 21 C -0.191 4.191 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.010 0.990 33 H -0.025 1.025 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.692 12.058 -9.025 15.507 hybrid contribution 0.023 -1.650 0.180 1.660 sum 3.715 10.408 -8.844 14.154 Atomic orbital electron populations 1.21977 0.95753 1.01230 1.01921 1.21137 0.95737 0.99443 0.93726 0.89566 1.21544 1.00771 0.94374 0.97772 1.21498 1.00617 0.96565 0.96411 1.22202 1.00883 0.98380 0.96804 1.21672 0.98213 0.94539 0.87599 0.93229 1.60642 1.05421 1.29654 1.35191 1.19121 0.91755 0.86890 0.93521 1.21581 1.10531 1.13276 1.11967 0.91806 1.25974 0.95140 0.97727 1.00971 1.70100 1.18669 1.26540 1.42227 0.85326 0.78991 0.77245 0.78688 1.19850 1.20656 1.18695 1.21030 0.99724 0.92594 0.95152 0.91472 1.21685 1.00254 0.99390 0.97816 0.94008 0.92777 0.91420 0.91472 0.90295 0.91333 0.92432 0.95075 0.91589 0.85229 0.98991 1.02460 0.92673 0.93943 0.93673 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.15 71.98 0.59 -2.96 16 2 C -0.08 -1.84 2.72 -10.79 -0.03 -1.87 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.11 -2.21 5.45 30.59 0.17 -2.04 16 5 C -0.11 -2.85 5.65 30.59 0.17 -2.67 16 6 C -0.14 -4.66 5.17 30.59 0.16 -4.50 16 7 C 0.09 3.26 1.64 44.92 0.07 3.33 16 8 H 0.05 2.02 6.09 -2.39 -0.01 2.00 16 9 N -0.68 -30.12 5.47 -495.58 -2.71 -32.83 16 10 C 0.22 11.93 5.24 85.56 0.45 12.38 16 11 C -0.54 -31.39 9.32 25.60 0.24 -31.15 16 12 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 13 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 14 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 15 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 C -0.07 -1.90 2.21 -10.79 -0.02 -1.92 16 20 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 21 C -0.13 -4.02 8.68 71.98 0.63 -3.39 16 22 H 0.04 1.14 4.81 -2.39 -0.01 1.13 16 23 H 0.05 1.29 6.43 -2.39 -0.02 1.27 16 24 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.52 6.43 -2.39 -0.02 1.50 16 29 H 0.03 1.18 7.46 -2.39 -0.02 1.16 16 30 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 31 H 0.33 14.07 8.46 -89.69 -0.76 13.31 16 32 H -0.01 -0.49 8.06 -2.39 -0.02 -0.51 16 33 H -0.04 -2.53 7.44 -2.39 -0.02 -2.54 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.04 1.31 6.43 -2.39 -0.02 1.29 16 36 H 0.04 1.59 7.60 -2.38 -0.02 1.57 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.05 279.74 2.75 -61.30 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.27 Total: 16.24 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 2.88 Total: -34.35 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -2.43 Total: -90.39 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.05 2.75 -61.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.642 kcal (2) G-P(sol) polarization free energy of solvation -64.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds