Wall clock time and date at job start Sun Mar 29 2020 21:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47156 * 2 1 4 4 H 1.09003 * 109.47271 * 56.63631 * 3 2 1 5 5 C 1.50698 * 109.47326 * 176.63763 * 3 2 1 6 6 H 1.08001 * 120.00501 * 120.00075 * 5 3 2 7 7 C 1.37877 * 119.99984 * 299.99703 * 5 3 2 8 8 N 1.31517 * 119.99935 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00192 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47064 * 60.00428 * 9 7 5 11 11 H 1.48498 * 109.47343 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47223 * 300.00564 * 9 7 5 13 13 N 1.46903 * 109.47245 * 296.63918 * 3 2 1 14 14 C 1.46902 * 110.99649 * 295.85392 * 13 3 2 15 15 C 1.46895 * 111.00033 * 171.90094 * 13 3 2 16 16 C 1.54266 * 110.03589 * 303.69640 * 15 13 3 17 17 C 1.54894 * 104.19559 * 217.10594 * 16 15 13 18 18 C 1.54888 * 102.74594 * 37.94261 * 17 16 15 19 19 C 1.53878 * 110.03330 * 186.52915 * 15 13 3 20 20 H 1.09001 * 109.46987 * 175.25041 * 1 2 3 21 21 H 1.09001 * 109.47023 * 55.24818 * 1 2 3 22 22 H 1.09000 * 109.47203 * 295.24329 * 1 2 3 23 23 H 1.09001 * 109.47108 * 119.99768 * 2 1 3 24 24 H 1.08995 * 109.47284 * 239.99880 * 2 1 3 25 25 H 0.97005 * 119.99902 * 179.97438 * 8 7 5 26 26 H 1.09003 * 109.47066 * 60.00030 * 14 13 3 27 27 H 1.08999 * 109.47101 * 179.97438 * 14 13 3 28 28 H 1.08998 * 109.47360 * 299.99885 * 14 13 3 29 29 H 1.09004 * 110.01571 * 65.14154 * 15 13 3 30 30 H 1.08994 * 110.48489 * 335.78275 * 16 15 13 31 31 H 1.09001 * 110.48790 * 98.42661 * 16 15 13 32 32 H 1.09000 * 110.75322 * 279.62599 * 17 16 15 33 33 H 1.08997 * 110.91015 * 156.32790 * 17 16 15 34 34 H 1.09001 * 110.48133 * 203.37463 * 18 17 16 35 35 H 1.08996 * 110.48798 * 80.73831 * 18 17 16 36 36 H 1.08995 * 110.03320 * 238.57329 * 19 15 13 37 37 H 1.09003 * 110.02904 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6283 1.9734 0.8583 5 6 3.5447 1.4433 0.0833 6 1 4.1289 1.8953 -0.7045 7 6 4.1755 0.8670 1.1655 8 7 3.4641 0.3162 2.1247 9 14 6.0406 0.8674 1.2685 10 1 6.5361 2.2673 1.2681 11 1 6.4675 0.1912 2.5197 12 1 6.6012 0.1437 0.0991 13 7 1.6177 2.1111 -1.2380 14 6 2.2343 1.4812 -2.4132 15 6 1.9216 3.5475 -1.1904 16 6 1.2590 4.1872 0.0471 17 6 0.8037 5.5836 -0.4450 18 6 0.3233 5.2970 -1.8894 19 6 1.3267 4.2532 -2.4217 20 1 -0.3633 -1.0242 -0.0851 21 1 -0.3633 0.5858 -0.8444 22 1 -0.3633 0.4383 0.9295 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 3.9079 -0.0896 2.8858 26 1 1.9361 0.4339 -2.4624 27 1 1.9045 1.9953 -3.3159 28 1 3.3194 1.5466 -2.3332 29 1 3.0005 3.6998 -1.1579 30 1 0.4006 3.5972 0.3679 31 1 1.9804 4.2852 0.8583 32 1 1.6392 6.2836 -0.4474 33 1 -0.0150 5.9635 0.1661 34 1 0.3619 6.2049 -2.4913 35 1 -0.6862 4.8862 -1.8812 36 1 2.1167 4.7486 -2.9861 37 1 0.8129 3.5297 -3.0547 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037092744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:59 Heat of formation + Delta-G solvation = -13.495002 kcal Electronic energy + Delta-G solvation = -15193.614022 eV Core-core repulsion = 12970.141820 eV Total energy + Delta-G solvation = -2223.472202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.43589 -35.50517 -32.38855 -31.02108 -28.46936 -27.10735 -26.46017 -24.11133 -22.41523 -20.22184 -19.29365 -18.48331 -16.12748 -15.81832 -14.97880 -14.58246 -13.68207 -13.45235 -12.99394 -12.84262 -12.60433 -11.93202 -11.65067 -11.26919 -11.06321 -10.88531 -10.70201 -10.63359 -10.55210 -10.41938 -10.21917 -10.13915 -10.09239 -9.73284 -9.60118 -9.31283 -8.97905 -8.30450 -7.01708 -5.94072 -4.06998 3.29169 3.34429 3.37037 4.42336 5.10101 5.14252 5.23396 5.30189 5.49602 5.94072 6.05001 6.09232 6.20216 6.24964 6.31959 6.34872 6.38784 6.46977 6.52189 6.57348 6.63426 6.72816 6.75106 6.86484 6.91569 7.04201 7.17323 7.25982 7.43991 7.69460 7.81969 8.05900 8.24058 8.42401 8.56384 9.03710 9.59768 11.04635 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028517 B = 0.011188 C = 0.009767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.637535 B = 2502.053136 C = 2866.196149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.211 3.789 4 H 0.043 0.957 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.532 5.532 14 C 0.030 3.970 15 C 0.090 3.910 16 C -0.108 4.108 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.120 4.120 20 H 0.024 0.976 21 H 0.050 0.950 22 H 0.037 0.963 23 H 0.090 0.910 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 5.732 -5.567 9.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C 0.104 3.896 4 H 0.061 0.939 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.256 5.256 14 C -0.118 4.118 15 C -0.019 4.019 16 C -0.146 4.146 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.158 4.158 20 H 0.043 0.957 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.109 0.891 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.884 5.569 -5.425 9.181 hybrid contribution 2.100 -0.031 0.202 2.110 sum -2.784 5.539 -5.223 8.106 Atomic orbital electron populations 1.21724 0.98966 0.98412 1.00557 1.21602 0.92141 0.99409 1.01852 1.19295 0.92600 0.90931 0.86751 0.93898 1.21705 0.92965 1.37379 1.05849 0.92785 1.24893 0.97686 0.95177 0.95653 1.69867 1.34873 1.38001 1.09737 0.86781 0.86514 0.78138 0.77291 1.20439 1.21273 1.20429 1.62644 1.57469 1.01038 1.04496 1.22214 0.97815 0.99045 0.92756 1.22002 0.97266 0.89315 0.93327 1.22329 1.00576 0.94232 0.97491 1.22490 0.99888 0.97821 0.96130 1.22277 0.99164 0.97966 0.96166 1.22278 0.97949 0.97469 0.98137 0.95734 0.93103 0.94402 0.89145 0.94992 0.92933 0.92363 0.94126 0.95234 0.94119 0.90988 0.91849 0.92261 0.92316 0.92843 0.91918 0.93112 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.85 37.16 0.37 -2.51 16 2 C -0.11 -2.67 5.08 -26.73 -0.14 -2.81 16 3 C 0.21 5.16 1.51 -68.87 -0.10 5.06 16 4 H 0.04 1.16 6.44 -51.93 -0.33 0.82 16 5 C -0.54 -14.46 7.15 -34.44 -0.25 -14.71 16 6 H 0.05 1.47 5.82 -52.49 -0.31 1.16 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.97 11.30 55.43 0.63 -24.34 16 9 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -11.28 3.79 -226.95 -0.86 -12.14 16 14 C 0.03 0.61 8.69 60.07 0.52 1.13 16 15 C 0.09 1.75 2.36 -66.60 -0.16 1.60 16 16 C -0.11 -2.01 5.04 -25.07 -0.13 -2.13 16 17 C -0.13 -1.86 6.91 -24.74 -0.17 -2.03 16 18 C -0.12 -1.66 6.83 -25.08 -0.17 -1.84 16 19 C -0.12 -1.93 5.90 -25.62 -0.15 -2.08 16 20 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 1.02 7.57 -51.93 -0.39 0.62 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 24 H 0.03 0.76 6.34 -51.93 -0.33 0.43 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.06 1.17 6.34 -51.93 -0.33 0.84 16 27 H 0.04 0.70 6.39 -51.93 -0.33 0.37 16 28 H 0.03 0.64 6.22 -51.93 -0.32 0.31 16 29 H 0.04 0.89 7.19 -51.93 -0.37 0.51 16 30 H 0.07 1.40 7.55 -51.93 -0.39 1.01 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.12 6.58 -51.93 -0.34 0.78 16 LS Contribution 276.42 15.07 4.17 4.17 Total: -1.00 -27.08 276.42 -7.84 -34.92 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.28 Total: -0.30 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.47 Total: -18.56 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.23 Total: -36.48 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.08 -7.84 -34.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037092744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.420 kcal (2) G-P(sol) polarization free energy of solvation -27.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds