Wall clock time and date at job start Sun Mar 29 2020 21:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47156 * 2 1 4 4 H 1.09003 * 109.47271 * 56.63631 * 3 2 1 5 5 C 1.50698 * 109.47326 * 176.63763 * 3 2 1 6 6 H 1.08001 * 120.00501 * 120.00075 * 5 3 2 7 7 C 1.37877 * 119.99984 * 299.99703 * 5 3 2 8 8 N 1.31517 * 119.99935 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00192 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47064 * 60.00428 * 9 7 5 11 11 H 1.48498 * 109.47343 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47223 * 300.00564 * 9 7 5 13 13 N 1.46903 * 109.47245 * 296.63918 * 3 2 1 14 14 C 1.46902 * 110.99649 * 295.85392 * 13 3 2 15 15 C 1.46895 * 111.00033 * 171.90094 * 13 3 2 16 16 C 1.54266 * 110.03589 * 303.69640 * 15 13 3 17 17 C 1.54894 * 104.19559 * 217.10594 * 16 15 13 18 18 C 1.54888 * 102.74594 * 37.94261 * 17 16 15 19 19 C 1.53878 * 110.03330 * 186.52915 * 15 13 3 20 20 H 1.09001 * 109.46987 * 175.25041 * 1 2 3 21 21 H 1.09001 * 109.47023 * 55.24818 * 1 2 3 22 22 H 1.09000 * 109.47203 * 295.24329 * 1 2 3 23 23 H 1.09001 * 109.47108 * 119.99768 * 2 1 3 24 24 H 1.08995 * 109.47284 * 239.99880 * 2 1 3 25 25 H 0.97005 * 119.99902 * 179.97438 * 8 7 5 26 26 H 1.09003 * 109.47066 * 60.00030 * 14 13 3 27 27 H 1.08999 * 109.47101 * 179.97438 * 14 13 3 28 28 H 1.08998 * 109.47360 * 299.99885 * 14 13 3 29 29 H 1.09004 * 110.01571 * 65.14154 * 15 13 3 30 30 H 1.08994 * 110.48489 * 335.78275 * 16 15 13 31 31 H 1.09001 * 110.48790 * 98.42661 * 16 15 13 32 32 H 1.09000 * 110.75322 * 279.62599 * 17 16 15 33 33 H 1.08997 * 110.91015 * 156.32790 * 17 16 15 34 34 H 1.09001 * 110.48133 * 203.37463 * 18 17 16 35 35 H 1.08996 * 110.48798 * 80.73831 * 18 17 16 36 36 H 1.08995 * 110.03320 * 238.57329 * 19 15 13 37 37 H 1.09003 * 110.02904 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6283 1.9734 0.8583 5 6 3.5447 1.4433 0.0833 6 1 4.1289 1.8953 -0.7045 7 6 4.1755 0.8670 1.1655 8 7 3.4641 0.3162 2.1247 9 14 6.0406 0.8674 1.2685 10 1 6.5361 2.2673 1.2681 11 1 6.4675 0.1912 2.5197 12 1 6.6012 0.1437 0.0991 13 7 1.6177 2.1111 -1.2380 14 6 2.2343 1.4812 -2.4132 15 6 1.9216 3.5475 -1.1904 16 6 1.2590 4.1872 0.0471 17 6 0.8037 5.5836 -0.4450 18 6 0.3233 5.2970 -1.8894 19 6 1.3267 4.2532 -2.4217 20 1 -0.3633 -1.0242 -0.0851 21 1 -0.3633 0.5858 -0.8444 22 1 -0.3633 0.4383 0.9295 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 3.9079 -0.0896 2.8858 26 1 1.9361 0.4339 -2.4624 27 1 1.9045 1.9953 -3.3159 28 1 3.3194 1.5466 -2.3332 29 1 3.0005 3.6998 -1.1579 30 1 0.4006 3.5972 0.3679 31 1 1.9804 4.2852 0.8583 32 1 1.6392 6.2836 -0.4474 33 1 -0.0150 5.9635 0.1661 34 1 0.3619 6.2049 -2.4913 35 1 -0.6862 4.8862 -1.8812 36 1 2.1167 4.7486 -2.9861 37 1 0.8129 3.5297 -3.0547 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037092744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:59 Heat of formation + Delta-G solvation = -28.400431 kcal Electronic energy + Delta-G solvation = -15194.260370 eV Core-core repulsion = 12970.141820 eV Total energy + Delta-G solvation = -2224.118550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01826 -37.13158 -34.33744 -32.83484 -29.90591 -28.69944 -28.19330 -25.92187 -24.18583 -21.66647 -20.85157 -20.22271 -18.13970 -17.45326 -16.49443 -16.39009 -15.25931 -15.14478 -14.77434 -14.45691 -14.07426 -13.61868 -13.38017 -13.16244 -12.83516 -12.64629 -12.44071 -12.28618 -12.03298 -11.82520 -11.79952 -11.67920 -11.57159 -11.43355 -11.27122 -11.12958 -10.88147 -10.39380 -8.85924 -8.00819 -6.23211 1.35455 1.36245 1.43392 2.39403 3.16049 3.50128 3.83887 3.93447 4.22586 4.54339 4.61184 4.67178 4.73923 4.76927 4.82010 4.86572 4.90194 4.94242 5.05191 5.10400 5.15936 5.19632 5.27019 5.32080 5.39889 5.44395 5.52349 5.54127 5.58137 5.68325 5.85348 6.10089 6.25978 6.44526 6.78174 6.99795 7.46816 8.92887 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028517 B = 0.011188 C = 0.009767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.637535 B = 2502.053136 C = 2866.196149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 C 0.218 3.782 4 H 0.013 0.987 5 C -0.549 4.549 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.275 1.275 13 N -0.528 5.528 14 C 0.035 3.965 15 C 0.084 3.916 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.113 4.113 20 H 0.045 0.955 21 H 0.059 0.941 22 H 0.032 0.968 23 H 0.060 0.940 24 H 0.029 0.971 25 H 0.261 0.739 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.007 0.993 29 H 0.010 0.990 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 6.761 -6.990 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.111 3.889 4 H 0.031 0.969 5 C -0.588 4.588 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.200 1.200 13 N -0.252 5.252 14 C -0.114 4.114 15 C -0.025 4.025 16 C -0.147 4.147 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.151 4.151 20 H 0.064 0.936 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.539 6.605 -6.861 11.017 hybrid contribution 2.309 -0.344 0.644 2.421 sum -3.230 6.262 -6.216 9.396 Atomic orbital electron populations 1.21576 0.96265 0.99909 1.00616 1.21460 0.94521 0.98509 1.00152 1.19050 0.91220 0.91256 0.87405 0.96894 1.21950 0.94383 1.36907 1.05541 0.93715 1.25570 1.01594 0.95124 0.95528 1.69993 1.36240 1.38639 1.10099 0.85875 0.81894 0.78076 0.77367 1.20238 1.20780 1.20034 1.62630 1.57076 1.01961 1.03498 1.22222 0.96380 0.99363 0.93433 1.22140 0.95884 0.88625 0.95864 1.22275 0.99201 0.96792 0.96462 1.22461 1.00775 0.95246 0.96985 1.22260 0.98568 0.98453 0.95482 1.22221 0.98740 0.97845 0.96329 0.93612 0.92230 0.94931 0.92181 0.95223 0.93019 0.92580 0.90938 0.97402 0.97174 0.92380 0.94677 0.91446 0.90512 0.89966 0.91395 0.91837 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.85 71.98 0.71 -4.41 16 2 C -0.11 -5.23 5.08 30.59 0.16 -5.08 16 3 C 0.22 10.94 1.51 44.17 0.07 11.01 16 4 H 0.01 0.74 6.44 -2.39 -0.02 0.72 16 5 C -0.55 -30.16 7.15 25.60 0.18 -29.98 16 6 H 0.04 2.50 5.82 -2.91 -0.02 2.48 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -52.58 11.30 21.45 0.24 -52.34 16 9 Si 0.94 44.31 29.54 68.60 2.03 46.33 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.53 -22.33 3.79 -871.95 -3.31 -25.63 16 14 C 0.03 1.35 8.69 127.69 1.11 2.46 16 15 C 0.08 3.25 2.36 45.64 0.11 3.36 16 16 C -0.11 -4.07 5.04 31.67 0.16 -3.91 16 17 C -0.12 -3.20 6.91 31.89 0.22 -2.98 16 18 C -0.11 -2.71 6.83 31.67 0.22 -2.49 16 19 C -0.11 -3.35 5.90 31.32 0.18 -3.16 16 20 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.06 2.29 7.57 -2.39 -0.02 2.28 16 22 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 3.29 5.99 -2.39 -0.01 3.28 16 24 H 0.03 1.41 6.34 -2.39 -0.02 1.39 16 25 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 26 H 0.06 2.20 6.34 -2.39 -0.02 2.19 16 27 H 0.07 2.37 6.39 -2.39 -0.02 2.35 16 28 H 0.01 0.33 6.22 -2.39 -0.01 0.31 16 29 H 0.01 0.45 7.19 -2.38 -0.02 0.44 16 30 H 0.06 2.30 7.55 -2.39 -0.02 2.28 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 2.11 6.58 -2.39 -0.02 2.09 16 Total: -1.00 -58.89 276.42 3.54 -55.34 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.02 Total: 9.84 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 3.56 Total: -33.54 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -3.06 Total: -77.98 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -58.89 3.54 -55.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037092744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.943 kcal (2) G-P(sol) polarization free energy of solvation -58.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds