Wall clock time and date at job start Sun Mar 29 2020 21:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46975 * 2 1 4 4 H 1.09007 * 109.46586 * 303.28932 * 3 2 1 5 5 C 1.50695 * 109.47098 * 183.29104 * 3 2 1 6 6 H 1.08002 * 120.00241 * 239.99422 * 5 3 2 7 7 C 1.37875 * 120.00139 * 59.99930 * 5 3 2 8 8 N 1.31513 * 120.00026 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99886 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47103 * 89.99941 * 9 7 5 11 11 H 1.48502 * 109.46948 * 209.99925 * 9 7 5 12 12 H 1.48496 * 109.47189 * 329.99477 * 9 7 5 13 13 N 1.46901 * 109.47369 * 63.28765 * 3 2 1 14 14 C 1.46898 * 110.99666 * 64.94365 * 13 3 2 15 15 C 1.46905 * 110.99991 * 188.90159 * 13 3 2 16 16 C 1.54263 * 110.02684 * 181.22192 * 15 13 3 17 17 C 1.54897 * 104.19242 * 217.10088 * 16 15 13 18 18 C 1.54893 * 102.74553 * 37.94873 * 17 16 15 19 19 C 1.53877 * 110.03132 * 64.05852 * 15 13 3 20 20 H 1.09001 * 109.47533 * 64.62948 * 1 2 3 21 21 H 1.09005 * 109.47151 * 184.62420 * 1 2 3 22 22 H 1.08996 * 109.47610 * 304.62101 * 1 2 3 23 23 H 1.08998 * 109.47497 * 240.00126 * 2 1 3 24 24 H 1.09005 * 109.47418 * 119.99258 * 2 1 3 25 25 H 0.97004 * 120.00074 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.46972 * 181.89268 * 14 13 3 27 27 H 1.09001 * 109.46813 * 61.89956 * 14 13 3 28 28 H 1.08995 * 109.47632 * 301.89376 * 14 13 3 29 29 H 1.08993 * 110.01590 * 302.66382 * 15 13 3 30 30 H 1.08999 * 110.49247 * 335.77959 * 16 15 13 31 31 H 1.09003 * 110.48254 * 98.43322 * 16 15 13 32 32 H 1.08998 * 110.75663 * 279.63351 * 17 16 15 33 33 H 1.09000 * 110.90828 * 156.33466 * 17 16 15 34 34 H 1.08996 * 110.48327 * 203.37983 * 18 17 16 35 35 H 1.08998 * 110.48499 * 80.73167 * 18 17 16 36 36 H 1.09004 * 110.02570 * 238.57064 * 19 15 13 37 37 H 1.08996 * 110.03360 * 359.94527 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6292 1.9731 -0.8591 5 6 3.5447 1.4434 -0.0816 6 1 4.1280 1.8958 0.7068 7 6 4.1768 0.8666 -1.1626 8 7 3.4666 0.3153 -2.1224 9 14 6.0422 0.8670 -1.2633 10 1 6.5732 -0.3587 -0.6145 11 1 6.4609 0.8942 -2.6878 12 1 6.5751 2.0659 -0.5678 13 7 1.6162 2.1118 1.2372 14 6 2.2461 1.4944 2.4119 15 6 1.9028 3.5515 1.1816 16 6 1.4776 4.2261 2.5021 17 6 0.9172 5.6017 2.0626 18 6 0.1759 5.2635 0.7453 19 6 1.0751 4.2110 0.0646 20 1 -0.3634 0.4403 -0.9285 21 1 -0.3634 -1.0244 0.0829 22 1 -0.3634 0.5838 0.8456 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8901 25 1 3.9113 -0.0902 -2.8832 26 1 1.8894 1.9871 3.3164 27 1 3.3286 1.6021 2.3423 28 1 1.9878 0.4361 2.4486 29 1 2.9659 3.7137 1.0041 30 1 0.7041 3.6400 2.9983 31 1 2.3383 4.3569 3.1581 32 1 1.7268 6.3081 1.8799 33 1 0.2238 5.9948 2.8061 34 1 0.0867 6.1512 0.1191 35 1 -0.8077 4.8448 0.9577 36 1 1.7367 4.6940 -0.6546 37 1 0.4615 3.4627 -0.4369 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037092745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:01 Heat of formation + Delta-G solvation = -13.782578 kcal Electronic energy + Delta-G solvation = -15175.557395 eV Core-core repulsion = 12952.072723 eV Total energy + Delta-G solvation = -2223.484672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.43952 -35.52195 -32.38322 -31.02638 -28.47894 -27.11404 -26.47752 -24.10471 -22.42165 -20.17167 -19.45025 -18.40967 -16.16363 -15.63979 -15.07141 -14.73418 -13.90521 -13.15108 -12.93361 -12.80647 -12.62134 -12.04828 -11.59954 -11.32995 -11.06766 -10.88275 -10.73386 -10.63074 -10.59890 -10.39995 -10.34996 -10.13782 -9.97899 -9.75532 -9.60812 -9.31448 -8.97304 -8.31037 -7.01249 -5.94475 -4.07349 3.27717 3.35045 3.37746 4.42108 5.09318 5.13113 5.20357 5.29519 5.49294 5.97395 6.03921 6.06207 6.13834 6.23804 6.29539 6.32851 6.37524 6.44704 6.51570 6.55139 6.67441 6.73711 6.79864 6.85525 6.88075 7.01833 7.17394 7.24975 7.44620 7.68201 7.81605 8.05670 8.23620 8.42436 8.56408 9.03583 9.59496 11.04282 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.028730 B = 0.011039 C = 0.009637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.342095 B = 2535.929094 C = 2904.899307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.210 3.790 4 H 0.042 0.958 5 C -0.539 4.539 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.532 5.532 14 C 0.032 3.968 15 C 0.088 3.912 16 C -0.118 4.118 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.112 4.112 20 H 0.037 0.963 21 H 0.024 0.976 22 H 0.050 0.950 23 H 0.090 0.910 24 H 0.032 0.968 25 H 0.260 0.740 26 H 0.040 0.960 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 5.748 5.860 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.104 3.896 4 H 0.060 0.940 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.256 5.256 14 C -0.117 4.117 15 C -0.021 4.021 16 C -0.156 4.156 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.150 4.150 20 H 0.056 0.944 21 H 0.043 0.957 22 H 0.069 0.931 23 H 0.109 0.891 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.910 5.586 5.712 9.378 hybrid contribution 2.094 -0.028 -0.249 2.109 sum -2.815 5.558 5.463 8.286 Atomic orbital electron populations 1.21723 0.98956 0.98422 1.00556 1.21597 0.92146 0.99351 1.01851 1.19297 0.92612 0.90951 0.86776 0.94043 1.21744 0.92958 1.37271 1.05885 0.92689 1.24897 0.97721 0.95193 0.95635 1.69876 1.34789 1.38056 1.09754 0.86716 0.86512 0.78318 0.77170 1.20758 1.21224 1.20147 1.62645 1.57300 1.01140 1.04550 1.22190 0.97556 0.99209 0.92732 1.22037 0.97585 0.89307 0.93175 1.22487 1.00044 0.95441 0.97650 1.22447 0.99200 0.97253 0.97197 1.22318 0.98897 0.98304 0.96234 1.22123 0.97973 0.97353 0.97533 0.94415 0.95727 0.93085 0.89148 0.94970 0.92989 0.94098 0.95371 0.92358 0.93755 0.91081 0.92889 0.92164 0.92425 0.92695 0.92002 0.92603 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.84 37.16 0.37 -2.51 16 2 C -0.11 -2.66 5.10 -26.73 -0.14 -2.80 16 3 C 0.21 5.16 1.51 -68.86 -0.10 5.05 16 4 H 0.04 1.12 6.40 -51.93 -0.33 0.79 16 5 C -0.54 -14.48 7.07 -34.44 -0.24 -14.73 16 6 H 0.06 1.50 5.84 -52.49 -0.31 1.19 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.02 11.30 55.43 0.63 -24.39 16 9 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 N -0.53 -11.28 3.78 -226.95 -0.86 -12.14 16 14 C 0.03 0.64 8.61 60.06 0.52 1.15 16 15 C 0.09 1.72 2.49 -66.59 -0.17 1.55 16 16 C -0.12 -1.89 5.13 -25.07 -0.13 -2.02 16 17 C -0.12 -1.70 6.91 -24.73 -0.17 -1.88 16 18 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 19 C -0.11 -2.04 5.84 -25.62 -0.15 -2.19 16 20 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 1.02 7.57 -51.93 -0.39 0.63 16 23 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 24 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.04 0.71 6.53 -51.93 -0.34 0.37 16 27 H 0.03 0.60 6.25 -51.93 -0.32 0.28 16 28 H 0.06 1.17 6.28 -51.93 -0.33 0.85 16 29 H 0.04 0.98 7.04 -51.93 -0.37 0.61 16 30 H 0.07 1.14 7.40 -51.93 -0.38 0.76 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.48 6.73 -51.93 -0.35 1.13 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -27.17 276.37 -7.85 -35.02 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.28 Total: -0.40 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -0.48 Total: -18.54 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.23 Total: -36.53 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.17 -7.85 -35.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037092745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.237 kcal (2) G-P(sol) polarization free energy of solvation -27.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds